ATP6V1C2 — 71 ClinVar variants
All ClinVar germline ATP6V1C2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 62 flagged for review →
1 Likely pathogenic · 1 Conflicting · 2 Benign · 2 Likely benign · 65 Uncertain significance
Full ATP6V1C2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 62
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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ATP6V1C2 p.Ile168Thr
Likely pathogenic
No assertion criteria
distal renal tubular acidosis
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 51
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- ATP6V1C2 p.Ala307Val Uncertain significance Single submitter
- ATP6V1C2 p.Ala9Thr Uncertain significance Single submitter
- ATP6V1C2 p.Arg248Cys Uncertain significance Single submitter
- ATP6V1C2 p.Asn15Ser Uncertain significance Single submitter
- ATP6V1C2 p.Asn243Lys Uncertain significance Single submitter
- ATP6V1C2 p.Asn30Lys Uncertain significance Single submitter
- ATP6V1C2 p.Cys279Arg Uncertain significance Single submitter
- ATP6V1C2 p.Glu201Asp Uncertain significance Single submitter
- ATP6V1C2 p.Glu242Gln Uncertain significance Single submitter
- ATP6V1C2 p.Glu254Asp Uncertain significance Single submitter
- ATP6V1C2 p.Glu258Val Uncertain significance Single submitter
- ATP6V1C2 p.Glu262Lys Uncertain significance Single submitter
- ATP6V1C2 p.Glu315Gln Uncertain significance Single submitter
- ATP6V1C2 p.Glu315Val Uncertain significance Single submitter
- ATP6V1C2 p.Glu88Gly Uncertain significance Single submitter
- ATP6V1C2 p.His369Arg Uncertain significance Single submitter
- ATP6V1C2 p.Ile421Leu Uncertain significance Single submitter
- ATP6V1C2 p.Leu228Val Uncertain significance Single submitter
- ATP6V1C2 p.Leu353Phe Uncertain significance Single submitter
- ATP6V1C2 p.Leu357Pro Uncertain significance Single submitter
- ATP6V1C2 p.Lys255Glu Uncertain significance Single submitter
- ATP6V1C2 p.Lys272Gln Uncertain significance Single submitter
- ATP6V1C2 p.Lys28Gln Uncertain significance Single submitter
- ATP6V1C2 p.Lys293Arg Uncertain significance Single submitter
- ATP6V1C2 p.Lys36Gln Uncertain significance Single submitter
- ATP6V1C2 p.Lys375Arg Uncertain significance Single submitter
- ATP6V1C2 p.Met108Arg Uncertain significance Single submitter
- ATP6V1C2 p.Met108Leu Uncertain significance Single submitter
- ATP6V1C2 p.Met157Ile Uncertain significance Single submitter
- ATP6V1C2 p.Met264Ile Uncertain significance Single submitter
- ATP6V1C2 p.Phe361Leu Uncertain significance Single submitter
- ATP6V1C2 p.Pro191Arg Uncertain significance Single submitter
- ATP6V1C2 p.Pro290Leu Uncertain significance Single submitter
- ATP6V1C2 p.Pro298Leu Uncertain significance Single submitter
- ATP6V1C2 p.Ser278Ala Uncertain significance Single submitter
- ATP6V1C2 p.Ser278Phe Uncertain significance Single submitter
- ATP6V1C2 p.Ser2Pro Uncertain significance Single submitter
- ATP6V1C2 p.Ser316Arg Uncertain significance Single submitter
- ATP6V1C2 p.Thr139Met Uncertain significance Single submitter
- ATP6V1C2 p.Thr216Ile Uncertain significance Single submitter
- ATP6V1C2 p.Thr35Ala Uncertain significance Single submitter
- ATP6V1C2 p.Tyr33Cys Uncertain significance Single submitter
- ATP6V1C2 p.Tyr413Cys Uncertain significance Single submitter
- ATP6V1C2 p.Val121Met Uncertain significance Single submitter
- ATP6V1C2 p.Val175Met Uncertain significance Single submitter
- ATP6V1C2 p.Val188Ile Uncertain significance Single submitter
- ATP6V1C2 p.Val280Ala Uncertain significance Single submitter
- ATP6V1C2 p.Val352Met Uncertain significance Single submitter
- ATP6V1C2 p.Val44Met Uncertain significance Single submitter
- ATP6V1C2 p.Val86Ile Uncertain significance Single submitter
- ATP6V1C2 p.Lys283Glu Uncertain significance No assertion criteria
Predictors split 9
The independent predictors disagree with each other — read with care.
- ATP6V1C2 p.Arg326His Uncertain significance Single submitter
- ATP6V1C2 p.Arg386Pro Uncertain significance Single submitter
- ATP6V1C2 p.Glu132Gly Uncertain significance Single submitter
- ATP6V1C2 p.Glu20Gly Uncertain significance Single submitter
- ATP6V1C2 p.Leu117Phe Uncertain significance Single submitter
- ATP6V1C2 p.Leu149Met Uncertain significance Single submitter
- ATP6V1C2 p.Leu324Arg Uncertain significance Single submitter
- ATP6V1C2 p.Phe174Leu Uncertain significance Single submitter
- ATP6V1C2 p.Phe4Leu Uncertain significance Single submitter
All ATP6V1C2 variants
Likely pathogenic 1
- p.Ile168Thr No assertion criteria distal renal tubular acidosis ⚠
Conflicting classifications of pathogenicity 1
- p.Ala129Val Single submitter ⚠
Benign 2
- c.570-4G>A Multiple submitters
- p.Gly52= Multiple submitters
Likely benign 2
- c.1061+4C>T Single submitter
- p.Ala265Thr Single submitter
Uncertain significance 65
- p.Ala307Val Single submitter ⚠
- p.Ala9Thr Single submitter ⚠
- p.Arg248Cys Single submitter ⚠
- p.Arg326His Single submitter ⚠
- p.Arg386Pro Single submitter ⚠
- p.Asn15Ser Single submitter ⚠
- p.Asn243Lys Single submitter ⚠
- p.Asn30Lys Single submitter ⚠
- p.Asp107Glu Single submitter
- p.Cys279Arg Single submitter ⚠
- p.Glu132Gly Single submitter ⚠
- p.Glu201Asp Single submitter ⚠
- p.Glu20Gly Single submitter ⚠
- p.Glu242Gln Single submitter ⚠
- p.Glu254Asp Single submitter ⚠
- p.Glu258Val Single submitter ⚠
- p.Glu262Lys Single submitter ⚠
- p.Glu315fs Single submitter
- p.Glu315Gln Single submitter ⚠
- p.Glu315Val Single submitter ⚠
- p.Glu88Gly Single submitter ⚠
- p.Gly94Arg Single submitter
- p.His369Arg Single submitter ⚠
- p.Ile421Leu Single submitter ⚠
- p.Leu117Phe Single submitter ⚠
- p.Leu149Met Single submitter ⚠
- p.Leu228Val Single submitter ⚠
- p.Leu324Arg Single submitter ⚠
- p.Leu353Phe Single submitter ⚠
- p.Leu357Pro Single submitter ⚠
- p.Lys255Glu Single submitter ⚠
- p.Lys272Gln Single submitter ⚠
- p.Lys28Gln Single submitter ⚠
- p.Lys293Arg Single submitter ⚠
- p.Lys36Gln Single submitter ⚠
- p.Lys375Arg Single submitter ⚠
- p.Met108Arg Single submitter ⚠
- p.Met108Leu Single submitter ⚠
- p.Met157Ile Single submitter ⚠
- p.Met264Ile Single submitter ⚠
- p.Phe100Val Single submitter
- p.Phe174Leu Single submitter ⚠
- p.Phe361Leu Single submitter ⚠
- p.Phe4Leu Single submitter ⚠
- p.Pro191Arg Single submitter ⚠
- p.Pro290Leu Single submitter ⚠
- p.Pro298Leu Single submitter ⚠
- p.Pro368Leu Single submitter
- p.Ser278Ala Single submitter ⚠
- p.Ser278Phe Single submitter ⚠
- p.Ser2Pro Single submitter ⚠
- p.Ser316Arg Single submitter ⚠
- p.Thr139Met Single submitter ⚠
- p.Thr216Ile Single submitter ⚠
- p.Thr35Ala Single submitter ⚠
- p.Tyr33Cys Single submitter ⚠
- p.Tyr413Cys Single submitter ⚠
- p.Val121Met Single submitter ⚠
- p.Val175Met Single submitter ⚠
- p.Val188Ile Single submitter ⚠
- p.Val280Ala Single submitter ⚠
- p.Val352Met Single submitter ⚠
- p.Val44Met Single submitter ⚠
- p.Val86Ile Single submitter ⚠
- p.Lys283Glu No assertion criteria ⚠