CALR3 — 374 ClinVar variants

All ClinVar germline CALR3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 175 flagged for review →

9 Conflicting · 45 Benign · 4 Benign/Likely benign · 106 Likely benign · 210 Uncertain significance

Full CALR3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 175

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 5

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 119

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 51

The independent predictors disagree with each other — read with care.

All CALR3 variants

Conflicting classifications of pathogenicity 9

Benign 45

Benign/Likely benign 4

  • c.398-6T>C Multiple submitters hypertrophic cardiomyopathy 19
  • p.Asn42Ser Multiple submitters hypertrophic cardiomyopathy 19
  • p.Asp284Asn Multiple submitters Cardiovascular phenotype
  • p.Thr287= Multiple submitters Cardiovascular phenotype

Likely benign 106

  • c.92-7C>G Multiple submitters hypertrophic cardiomyopathy 19
  • p.Asp216= Multiple submitters hypertrophic cardiomyopathy 19
  • p.Leu171= Multiple submitters hypertrophic cardiomyopathy 19
  • p.Ser126= Multiple submitters hypertrophic cardiomyopathy 19
  • c.1011+11C>T Single submitter hypertrophic cardiomyopathy 19
  • c.1011+12G>A Single submitter hypertrophic cardiomyopathy 19
  • c.1011+12G>T Single submitter hypertrophic cardiomyopathy 19
  • c.1011+16T>A Single submitter hypertrophic cardiomyopathy 19
  • c.1012-10_1012-9del Single submitter hypertrophic cardiomyopathy 19
  • c.193+15_193+16del Single submitter hypertrophic cardiomyopathy 19
  • c.193+15A>G Single submitter hypertrophic cardiomyopathy 19
  • c.193+17G>A Single submitter hypertrophic cardiomyopathy 19
  • c.194-14T>A Single submitter hypertrophic cardiomyopathy 19
  • c.397+11G>A Single submitter hypertrophic cardiomyopathy 19
  • c.397+13G>A Single submitter hypertrophic cardiomyopathy 19
  • c.397+7T>A Single submitter hypertrophic cardiomyopathy 19
  • c.398-11C>A Single submitter hypertrophic cardiomyopathy 19
  • c.398-15T>A Single submitter hypertrophic cardiomyopathy 19
  • c.398-17G>C Single submitter hypertrophic cardiomyopathy 19
  • c.398-20G>A Single submitter hypertrophic cardiomyopathy 19
  • c.398-9T>C Single submitter hypertrophic cardiomyopathy 19
  • c.492+9T>C Single submitter hypertrophic cardiomyopathy 19
  • c.493-15C>G Single submitter hypertrophic cardiomyopathy 19
  • c.493-18T>C Single submitter hypertrophic cardiomyopathy 19
  • c.493-4G>A Single submitter hypertrophic cardiomyopathy 19
  • c.493-64del Single submitter
  • c.493-64dup Single submitter
  • c.678+13C>T Single submitter hypertrophic cardiomyopathy 19
  • c.679-7T>C Single submitter hypertrophic cardiomyopathy 19
  • c.786+13T>C Single submitter hypertrophic cardiomyopathy 19
  • c.786+14_786+15del Single submitter hypertrophic cardiomyopathy 19
  • c.786+18A>T Single submitter hypertrophic cardiomyopathy 19
  • c.786+9C>A Single submitter hypertrophic cardiomyopathy 19
  • c.787-11T>G Single submitter hypertrophic cardiomyopathy 19
  • c.787-18A>G Single submitter hypertrophic cardiomyopathy 19
  • c.787-20A>G Single submitter hypertrophic cardiomyopathy 19
  • c.787-8del Single submitter hypertrophic cardiomyopathy 19
  • c.91+13C>T Single submitter hypertrophic cardiomyopathy 19
  • c.91+15C>T Single submitter hypertrophic cardiomyopathy 19
  • c.91+7G>C Single submitter hypertrophic cardiomyopathy 19
  • c.918+16C>T Single submitter hypertrophic cardiomyopathy 19
  • c.918+20A>G Single submitter hypertrophic cardiomyopathy 19
  • c.919-10T>G Single submitter hypertrophic cardiomyopathy 19
  • c.92-16T>C Single submitter hypertrophic cardiomyopathy 19
  • c.92-20T>C Single submitter hypertrophic cardiomyopathy 19
  • c.92-6C>G Single submitter hypertrophic cardiomyopathy 19
  • c.92-8C>T Single submitter hypertrophic cardiomyopathy 19
  • p.Ala10= Single submitter hypertrophic cardiomyopathy 19
  • p.Ala115= Single submitter hypertrophic cardiomyopathy 19
  • p.Ala2= Single submitter hypertrophic cardiomyopathy 19
  • p.Ala235= Single submitter hypertrophic cardiomyopathy 19
  • p.Ala253= Single submitter hypertrophic cardiomyopathy 19
  • p.Arg356= Single submitter hypertrophic cardiomyopathy 19
  • p.Arg370= Single submitter hypertrophic cardiomyopathy 19
  • p.Arg80Pro Single submitter cardiomyopathy
  • p.Asn244= Single submitter hypertrophic cardiomyopathy 19
  • p.Asp246= Single submitter hypertrophic cardiomyopathy 19
  • p.Asp320= Single submitter hypertrophic cardiomyopathy 19
  • p.Asp43= Single submitter hypertrophic cardiomyopathy 19
  • p.Gln377= Single submitter hypertrophic cardiomyopathy 19
  • p.Glu156= Single submitter hypertrophic cardiomyopathy 19
  • p.Glu213= Single submitter hypertrophic cardiomyopathy 19
  • p.Glu323= Single submitter hypertrophic cardiomyopathy 19
  • p.Glu360= Single submitter hypertrophic cardiomyopathy 19
  • p.Gly329= Single submitter hypertrophic cardiomyopathy 19
  • p.Gly334= Single submitter hypertrophic cardiomyopathy 19
  • p.Gly65= Single submitter hypertrophic cardiomyopathy 19
  • p.Gly72= Single submitter hypertrophic cardiomyopathy 19
  • p.His32Arg Single submitter
  • p.His371= Single submitter hypertrophic cardiomyopathy 19
  • p.Ile297= Single submitter hypertrophic cardiomyopathy 19
  • p.Ile368= Single submitter hypertrophic cardiomyopathy 19
  • p.Leu202= Single submitter hypertrophic cardiomyopathy 19
  • p.Leu247= Single submitter hypertrophic cardiomyopathy 19
  • p.Leu286= Single submitter hypertrophic cardiomyopathy 19
  • p.Leu384= Single submitter hypertrophic cardiomyopathy 19
  • p.Leu91= Single submitter hypertrophic cardiomyopathy 19
  • p.Lys230= Single submitter hypertrophic cardiomyopathy 19
  • p.Lys272= Single submitter hypertrophic cardiomyopathy 19
  • p.Phe139= Single submitter hypertrophic cardiomyopathy 19
  • p.Phe232= Single submitter hypertrophic cardiomyopathy 19
  • p.Pro211= Single submitter hypertrophic cardiomyopathy 19
  • p.Pro254= Single submitter hypertrophic cardiomyopathy 19
  • p.Pro254Leu Single submitter hypertrophic cardiomyopathy 19
  • p.Pro259= Single submitter hypertrophic cardiomyopathy 19
  • p.Pro260= Single submitter hypertrophic cardiomyopathy 19
  • p.Pro339= Single submitter hypertrophic cardiomyopathy 19
  • p.Pro83= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser193= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser214= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser238= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser241= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser365= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser52= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser53= Single submitter hypertrophic cardiomyopathy 19
  • p.Ser78= Single submitter hypertrophic cardiomyopathy 19
  • p.Thr20= Single submitter hypertrophic cardiomyopathy 19
  • p.Thr203= Single submitter hypertrophic cardiomyopathy 19
  • p.Thr209= Single submitter hypertrophic cardiomyopathy 19
  • p.Thr283= Single submitter hypertrophic cardiomyopathy 19
  • p.Tyr129= Single submitter hypertrophic cardiomyopathy 19
  • p.Tyr172= Single submitter hypertrophic cardiomyopathy 19
  • p.Tyr182= Single submitter hypertrophic cardiomyopathy 19
  • p.Val112= Single submitter hypertrophic cardiomyopathy 19
  • p.Val21= Single submitter hypertrophic cardiomyopathy 19
  • p.Val97= Single submitter hypertrophic cardiomyopathy 19

Uncertain significance 210