CCNO — 257 ClinVar variants

All ClinVar germline CCNO variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 113 flagged for review →

24 Pathogenic · 2 Pathogenic/Likely pathogenic · 9 Likely pathogenic · 2 Conflicting · 8 Benign · 3 Benign/Likely benign · 93 Likely benign · 116 Uncertain significance

Full CCNO gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 113

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 1

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 68

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 44

The independent predictors disagree with each other — read with care.

All CCNO variants

Pathogenic 24

  • p.Gln103Ter Multiple submitters primary ciliary dyskinesia 29
  • p.Gln88fs Multiple submitters primary ciliary dyskinesia 29
  • p.Gly85fs Multiple submitters primary ciliary dyskinesia 29
  • p.Val90fs Multiple submitters primary ciliary dyskinesia 29
  • p.Ala207fs Single submitter primary ciliary dyskinesia
  • p.Arg304fs Single submitter primary ciliary dyskinesia
  • p.Asn159fs Single submitter primary ciliary dyskinesia
  • p.Asp292fs Single submitter primary ciliary dyskinesia
  • p.Gln127Ter Single submitter primary ciliary dyskinesia 29
  • p.Gln249fs Single submitter primary ciliary dyskinesia
  • p.Gln259Ter Single submitter primary ciliary dyskinesia
  • p.Gly56fs Single submitter primary ciliary dyskinesia
  • p.Leu161fs Single submitter primary ciliary dyskinesia
  • p.Leu213Pro Single submitter primary ciliary dyskinesia
  • p.Leu303fs Single submitter primary ciliary dyskinesia 29
  • p.Lys110fs Single submitter primary ciliary dyskinesia
  • p.Phe208fs Single submitter primary ciliary dyskinesia
  • p.Pro142fs Single submitter primary ciliary dyskinesia 29
  • p.Pro84fs Single submitter primary ciliary dyskinesia
  • p.Ser65fs Single submitter primary ciliary dyskinesia
  • p.Ser68Ter Single submitter primary ciliary dyskinesia
  • p.Tyr101fs Single submitter primary ciliary dyskinesia
  • p.Val265fs Single submitter primary ciliary dyskinesia
  • p.Pro309fs No assertion criteria primary ciliary dyskinesia 29

Pathogenic/Likely pathogenic 2

  • p.Val143fs Multiple submitters primary ciliary dyskinesia 29
  • p.Val180fs Multiple submitters primary ciliary dyskinesia

Likely pathogenic 9

Conflicting classifications of pathogenicity 2

Benign 8

Benign/Likely benign 3

  • p.Ala260= Multiple submitters primary ciliary dyskinesia
  • p.Glu314Lys Multiple submitters primary ciliary dyskinesia
  • p.Lys319= Multiple submitters primary ciliary dyskinesia 29

Likely benign 93

  • c.*223A>G Multiple submitters
  • p.Met334Ile Multiple submitters primary ciliary dyskinesia
  • p.Pro336Leu Multiple submitters primary ciliary dyskinesia ⚠
  • c.381+18C>G Single submitter primary ciliary dyskinesia
  • c.381+19C>T Single submitter primary ciliary dyskinesia
  • c.381+66C>T Single submitter
  • c.382-12C>G Single submitter primary ciliary dyskinesia
  • c.382-14C>A Single submitter primary ciliary dyskinesia
  • c.382-14C>T Single submitter primary ciliary dyskinesia
  • c.382-15C>G Single submitter primary ciliary dyskinesia
  • c.382-17C>T Single submitter primary ciliary dyskinesia
  • c.382-43A>T Single submitter
  • c.382-4G>A Single submitter primary ciliary dyskinesia
  • c.382-5G>T Single submitter primary ciliary dyskinesia
  • c.382-7C>T Single submitter primary ciliary dyskinesia
  • c.382-8C>T Single submitter primary ciliary dyskinesia
  • c.567+10G>A Single submitter primary ciliary dyskinesia
  • c.567+16A>G Single submitter primary ciliary dyskinesia
  • c.567+9G>A Single submitter primary ciliary dyskinesia
  • c.568-16del Single submitter primary ciliary dyskinesia
  • c.568-4G>C Single submitter primary ciliary dyskinesia
  • c.568-9G>T Single submitter primary ciliary dyskinesia
  • c.*52C>G Single submitter
  • p.Ala111= Single submitter primary ciliary dyskinesia
  • p.Ala77= Single submitter primary ciliary dyskinesia
  • p.Arg109= Single submitter primary ciliary dyskinesia
  • p.Arg145= Single submitter primary ciliary dyskinesia
  • p.Arg210= Single submitter primary ciliary dyskinesia
  • p.Arg263= Single submitter primary ciliary dyskinesia
  • p.Arg296Gln Single submitter primary ciliary dyskinesia
  • p.Arg36His Single submitter primary ciliary dyskinesia ⚠
  • p.Arg38= Single submitter primary ciliary dyskinesia
  • p.Asn47= Single submitter
  • p.Asp22= Single submitter primary ciliary dyskinesia
  • p.Cys105= Single submitter primary ciliary dyskinesia
  • p.Gln112= Single submitter primary ciliary dyskinesia
  • p.Gln146= Single submitter primary ciliary dyskinesia
  • p.Gln176= Single submitter primary ciliary dyskinesia
  • p.Gln88His Single submitter primary ciliary dyskinesia
  • p.Gln96= Single submitter
  • p.Gly148= Single submitter primary ciliary dyskinesia
  • p.Gly70= Single submitter primary ciliary dyskinesia
  • p.Gly85= Single submitter primary ciliary dyskinesia
  • p.His117= Single submitter primary ciliary dyskinesia
  • p.His193= Single submitter primary ciliary dyskinesia
  • p.His222= Single submitter primary ciliary dyskinesia
  • p.His333= Single submitter primary ciliary dyskinesia
  • p.Ile339= Single submitter primary ciliary dyskinesia
  • p.Ile57Val Single submitter Inborn genetic diseases
  • p.Leu154= Single submitter primary ciliary dyskinesia
  • p.Leu221= Single submitter primary ciliary dyskinesia
  • p.Leu282= Single submitter primary ciliary dyskinesia
  • p.Leu37= Single submitter primary ciliary dyskinesia
  • p.Leu51= Single submitter primary ciliary dyskinesia
  • p.Leu83= Single submitter primary ciliary dyskinesia
  • p.Leu95= Single submitter primary ciliary dyskinesia
  • p.Lys135= Single submitter primary ciliary dyskinesia
  • p.Lys31= Single submitter primary ciliary dyskinesia
  • p.Lys40= Single submitter primary ciliary dyskinesia
  • p.Phe151= Single submitter primary ciliary dyskinesia
  • p.Phe175= Single submitter primary ciliary dyskinesia
  • p.Phe208= Single submitter primary ciliary dyskinesia
  • p.Phe235= Single submitter primary ciliary dyskinesia
  • p.Phe61= Single submitter primary ciliary dyskinesia
  • p.Pro12= Single submitter primary ciliary dyskinesia
  • p.Pro142= Single submitter primary ciliary dyskinesia
  • p.Pro194= Single submitter primary ciliary dyskinesia
  • p.Pro231= Single submitter primary ciliary dyskinesia
  • p.Pro28= Single submitter primary ciliary dyskinesia
  • p.Pro280= Single submitter primary ciliary dyskinesia
  • p.Pro42= Single submitter primary ciliary dyskinesia
  • p.Pro45= Single submitter primary ciliary dyskinesia
  • p.Pro52= Single submitter primary ciliary dyskinesia
  • p.Pro6= Single submitter primary ciliary dyskinesia
  • p.Pro82= Single submitter primary ciliary dyskinesia
  • p.Pro86= Single submitter primary ciliary dyskinesia
  • p.Pro89= Single submitter primary ciliary dyskinesia
  • p.Ser10= Single submitter primary ciliary dyskinesia
  • p.Ser114= Single submitter primary ciliary dyskinesia
  • p.Ser277= Single submitter primary ciliary dyskinesia
  • p.Ser279= Single submitter primary ciliary dyskinesia
  • p.Ser281= Single submitter primary ciliary dyskinesia
  • p.Ser328Gly Single submitter Inborn genetic diseases
  • p.Ser349= Single submitter primary ciliary dyskinesia
  • p.Ser55= Single submitter primary ciliary dyskinesia
  • p.Ser66= Single submitter primary ciliary dyskinesia
  • p.Ser73= Single submitter primary ciliary dyskinesia
  • p.Thr157= Single submitter primary ciliary dyskinesia
  • p.Thr241= Single submitter primary ciliary dyskinesia
  • p.Thr276= Single submitter primary ciliary dyskinesia
  • p.Thr3= Single submitter primary ciliary dyskinesia
  • p.Thr332= Single submitter primary ciliary dyskinesia
  • p.Val220= Single submitter primary ciliary dyskinesia

Uncertain significance 116