CD46 — 559 ClinVar variants

All ClinVar germline CD46 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 262 flagged for review →

28 Pathogenic · 11 Pathogenic/Likely pathogenic · 20 Likely pathogenic · 37 Conflicting · 38 Benign · 10 Benign/Likely benign · 110 Likely benign · 305 Uncertain significance

Full CD46 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 262

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 21

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 209

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 209

Predictors split 32

The independent predictors disagree with each other — read with care.

All CD46 variants

Pathogenic 28

  • c.1082+2T>A Multiple submitters atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Trp276Ter Multiple submitters atypical hemolytic-uremic syndrome
  • c.476-2A>G Single submitter atypical hemolytic-uremic syndrome
  • c.857-148dup Single submitter
  • c.857-2A>G Single submitter atypical hemolytic-uremic syndrome
  • c.98-1G>C Single submitter atypical hemolytic-uremic syndrome
  • c.982+2T>C Single submitter atypical hemolytic-uremic syndrome
  • p.Ala93fs Single submitter
  • p.Asn235fs Single submitter atypical hemolytic-uremic syndrome
  • p.Asp257fs Single submitter atypical hemolytic-uremic syndrome
  • p.Cys256Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Glu137fs Single submitter
  • p.Glu42fs Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Gly130_Tyr131insTer Single submitter
  • p.Gly135fs Single submitter atypical hemolytic-uremic syndrome
  • p.Ile138fs Single submitter
  • p.Ile156fs Single submitter
  • p.Lys153Ter Single submitter
  • p.Lys245fs Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Lys249fs Single submitter atypical hemolytic-uremic syndrome
  • p.Phe69fs Single submitter atypical hemolytic-uremic syndrome
  • p.Thr267fs Single submitter atypical hemolytic-uremic syndrome
  • p.Thr305_Tyr306insTer Single submitter atypical hemolytic-uremic syndrome
  • p.Tyr316Ter Single submitter
  • p.Tyr353Ter Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Arg303fs No assertion criteria atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Gly259fs No assertion criteria atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Val180_Phe181insTer No assertion criteria atypical hemolytic-uremic syndrome with MCP/CD46 anomaly

Pathogenic/Likely pathogenic 11

  • c.286+1G>C Multiple submitters CD46-related disorders
  • c.286+2T>G Multiple submitters atypical hemolytic-uremic syndrome
  • c.287-2A>G Multiple submitters thrombotic microangiopathy
  • p.Ala296fs Multiple submitters atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Arg229Ter Multiple submitters Autosomal dominant and autosomal recessive CD46-related disorders
  • p.Arg59Ter Multiple submitters CD46-related disorders
  • p.Asp271_Ser272del Multiple submitters atypical hemolytic-uremic syndrome
  • p.Glu118fs Multiple submitters atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Lys51fs Multiple submitters atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Phe242Cys Multiple submitters atypical hemolytic-uremic syndrome
  • p.Trp86Ter Multiple submitters

Likely pathogenic 20

  • c.1019-2A>G Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • c.389+1G>A Single submitter
  • c.389+1G>T Single submitter
  • c.673+1G>A Single submitter
  • c.674-1G>A Single submitter CD46-related disorders
  • c.856+2del Single submitter
  • c.901+1G>A Single submitter
  • c.901+2T>G Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Asp198fs Single submitter CD46-related disorders
  • p.Cys127Phe Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Cys141Tyr Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Cys270Trp Single submitter atypical hemolytic-uremic syndrome
  • p.Gln238fs Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Gly259Val Single submitter atypical hemolytic-uremic syndrome
  • p.His173Arg Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly ⚠
  • p.Phe246Ile Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Pro165Ser Single submitter atypical hemolytic-uremic syndrome
  • p.Pro281Ser Single submitter atypical hemolytic-uremic syndrome
  • p.Tyr95fs Single submitter CD46-related disorders
  • p.Tyr117Ter No assertion criteria atypical hemolytic-uremic syndrome with MCP/CD46 anomaly

Conflicting classifications of pathogenicity 37

  • c.1018+7A>G Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • c.1082+2T>G Single submitter Familial Atypical Hemolytic-Uremic Syndrome
  • c.286+2T>C Single submitter atypical hemolytic-uremic syndrome
  • c.857-174A>C Single submitter CD46-related disorder
  • c.857-185T>C Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • c.857-1G>A Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • c.901+9A>G Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • c.902-1G>C Single submitter atypical hemolytic-uremic syndrome
  • c.944-1G>C Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Arg229Gln Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Arg370Gly Single submitter ⚠
  • p.Asp192His Single submitter kidney disorder ⚠
  • p.Asp266Asn Single submitter kidney disorder ⚠
  • p.Asp33His Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly ⚠
  • p.Asp92= Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Cys157Arg Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Cys35Tyr Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Cys64Phe Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly ⚠
  • p.Glu179Gln Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Glu234Lys Single submitter CD46-related disorder ⚠
  • p.Ile239Val Single submitter ⚠
  • p.Ile79Val Single submitter ⚠
  • p.Leu202Phe Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Lys66Asn Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly ⚠
  • p.Met24Val Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Met44Leu Single submitter atypical hemolytic-uremic syndrome
  • p.Pro231Arg Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Pro309Leu Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Pro350= Single submitter
  • p.Ser201Leu Single submitter atypical hemolytic-uremic syndrome
  • p.Ser240Pro Single submitter CD46-related disorders ⚠
  • p.Thr267_Asn273del Single submitter atypical hemolytic-uremic syndrome
  • p.Thr368= Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly
  • p.Thr368Ile Single submitter CD46-related disorder ⚠
  • p.Thr98Ile Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly ⚠
  • p.Tyr189Asp Single submitter atypical hemolytic-uremic syndrome with MCP/CD46 anomaly ⚠
  • p.Tyr95= Single submitter atypical hemolytic-uremic syndrome

Benign 38

Benign/Likely benign 10

Likely benign 110

Uncertain significance 305

Showing the top 300 by review status; the full set is in the sitemap.