CFH — 1446 ClinVar variants

All ClinVar germline CFH variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 831 flagged for review →

66 Pathogenic · 11 Pathogenic/Likely pathogenic · 45 Likely pathogenic · 74 Conflicting · 59 Benign · 36 Benign/Likely benign · 307 Likely benign · 848 Uncertain significance

Full CFH gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 831

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 4

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 29

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 1

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 456

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 456

Predictors split 341

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 341

All CFH variants

Pathogenic 66

  • p.Ala415fs Multiple submitters atypical hemolytic-uremic syndrome
  • p.Cys569Ter Multiple submitters atypical hemolytic-uremic syndrome
  • p.Gln586Ter Multiple submitters atypical hemolytic-uremic syndrome
  • p.Glu625Ter Multiple submitters age related macular degeneration 4
  • c.245-1G>C Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • c.2596+1G>C Single submitter atypical hemolytic-uremic syndrome
  • c.3493+2T>C Single submitter atypical hemolytic-uremic syndrome
  • c.350+1G>T Single submitter basal laminar drusen
  • c.351-2A>G Single submitter age related macular degeneration 4
  • c.790+1G>A Single submitter complement factor H deficiency
  • p.Ala301fs Single submitter age related macular degeneration 4
  • p.Ala473_Lys474insArgAlaGlyArgGlyGlySerArgLeuTer Single submitter
  • p.Arg1182Ser Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Arg1215Gly Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Arg885fs Single submitter atypical hemolytic-uremic syndrome
  • p.Asn607fs Single submitter complement factor H deficiency
  • p.Asp748fs Single submitter atypical hemolytic-uremic syndrome
  • p.Cys1032Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Cys294Ter Single submitter
  • p.Cys536Ter Single submitter
  • p.Cys915Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Gln408Ter Single submitter age related macular degeneration 4
  • p.Gln40Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Gln464Ter Single submitter
  • p.Gln925Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Glu1003Ter Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Glu1172Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Glu1195Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Glu189Ter Single submitter complement factor H deficiency
  • p.Glu456Ter Single submitter
  • p.Gly1204Ter Single submitter
  • p.Gly218Ter Single submitter age related macular degeneration 4
  • p.Gly600Ter Single submitter
  • p.His537fs Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.His651fs Single submitter
  • p.Ile157fs Single submitter
  • p.Ile184fs Single submitter basal laminar drusen
  • p.Leu593Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Lys1066Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Lys1162fs Single submitter atypical hemolytic-uremic syndrome
  • p.Lys204fs Single submitter basal laminar drusen
  • p.Lys224del Single submitter complement factor H deficiency
  • p.Lys474fs Single submitter atypical hemolytic-uremic syndrome
  • p.Lys584Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Phe723fs Single submitter atypical hemolytic-uremic syndrome
  • p.Phe960fs Single submitter atypical hemolytic-uremic syndrome
  • p.Ser451Ter Single submitter
  • p.Ser714Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Thr30fs Single submitter atypical hemolytic-uremic syndrome
  • p.Thr645fs Single submitter atypical hemolytic-uremic syndrome
  • p.Trp1037Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Trp198Ter Single submitter age related macular degeneration 4
  • p.Trp436Ter Single submitter
  • p.Trp525Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Tyr1016Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Tyr1225_Ter1232delinsXaa Single submitter atypical hemolytic-uremic syndrome
  • p.Tyr243Ter Single submitter
  • p.Tyr829fs Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Tyr899Ter Single submitter atypical hemolytic-uremic syndrome
  • p.Tyr916Ter Single submitter age related macular degeneration 4
  • p.Gln846fs No assertion criteria hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Glu800fs No assertion criteria hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Lys236_Cys237insTer No assertion criteria hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Lys768fs No assertion criteria inherited retinal dystrophy
  • p.Pro440fs No assertion criteria hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Tyr227fs No assertion criteria inherited retinal dystrophy

Pathogenic/Likely pathogenic 11

  • c.1520-1G>A Multiple submitters atypical hemolytic-uremic syndrome
  • c.3493+1G>A Multiple submitters atypical hemolytic-uremic syndrome
  • c.619+1G>A Multiple submitters basal laminar drusen
  • p.Arg1215Ter Multiple submitters age related macular degeneration 4
  • p.Arg232Ter Multiple submitters atypical hemolytic-uremic syndrome
  • p.Arg53Cys Multiple submitters complement factor H deficiency
  • p.Gln859Ter Multiple submitters complement factor H deficiency
  • p.Ile868fs Multiple submitters complement factor H deficiency
  • p.Ser1191Leu Multiple submitters CFH-related disorder ⚠
  • p.Trp1183Leu Multiple submitters complement factor H deficiency
  • p.Tyr957Ter Multiple submitters

Likely pathogenic 45

  • c.1337-2A>G Multiple submitters age related macular degeneration 4
  • c.2236+1G>C Multiple submitters complement factor H deficiency
  • p.Arg1215Leu Multiple submitters atypical hemolytic-uremic syndrome ⚠
  • p.Gln47fs Multiple submitters hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Lys1108Ter Multiple submitters complement factor H deficiency
  • p.Thr1217del Multiple submitters atypical hemolytic-uremic syndrome
  • p.Trp558Ter Multiple submitters hemolytic uremic syndrome, atypical, susceptibility to, 1
  • c.1520-2A>G Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • c.2057-1G>A Single submitter
  • c.2596+1G>A Single submitter
  • c.58+1G>T Single submitter
  • c.620-2A>G Single submitter age related macular degeneration 4
  • p.Ala1057_Tyr1058insTer Single submitter complement factor H deficiency
  • p.Ala473fs Single submitter complement factor H deficiency
  • p.Arg1182Trp Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1 ⚠
  • p.Arg127Leu Single submitter complement factor H deficiency
  • p.Arg232Gln Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Arg53Ser Single submitter atypical hemolytic-uremic syndrome
  • p.Cys1163Trp Single submitter atypical hemolytic-uremic syndrome
  • p.Cys16fs Single submitter atypical hemolytic-uremic syndrome
  • p.Cys192Phe Single submitter age related macular degeneration 4
  • p.Cys210Phe Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Cys385Phe Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Cys870Tyr Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Cys931Leu Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Gln1101Ter Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Gln1139fs Single submitter
  • p.Glu1198Gly Single submitter
  • p.Glu1198Lys Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Glu1198Val Single submitter atypical hemolytic-uremic syndrome ⚠
  • p.Glu19Ter Single submitter age related macular degeneration 4
  • p.Glu643Ter Single submitter
  • p.His373fs Single submitter
  • p.Leu992Ter Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Phe1199Leu Single submitter atypical hemolytic-uremic syndrome
  • p.Pro88Thr Single submitter complement factor H deficiency
  • p.Ser1158fs Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Ser193Leu Single submitter age related macular degeneration 4 ⚠
  • p.Ter1232IleextTer? Single submitter atypical hemolytic-uremic syndrome
  • p.Trp1183Arg Single submitter atypical hemolytic-uremic syndrome
  • p.Trp13Ter Single submitter hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Tyr112Ter Single submitter age related macular degeneration 4
  • p.Tyr1177Ter Single submitter
  • p.Leu1181Ser No assertion criteria hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Leu4fs No assertion criteria hemolytic uremic syndrome, atypical, susceptibility to, 1

Conflicting classifications of pathogenicity 74

Benign 59

Benign/Likely benign 36

  • c.1159+19T>G Multiple submitters basal laminar drusen
  • c.1160-31TTTA[2] Multiple submitters age related macular degeneration 4
  • c.2236+8T>A Multiple submitters age related macular degeneration 4
  • c.245-11_245-9dup Multiple submitters atypical hemolytic-uremic syndrome
  • c.245-7G>A Multiple submitters complement factor H deficiency
  • c.245-9del Multiple submitters basal laminar drusen
  • c.245-9dup Multiple submitters complement factor H deficiency
  • c.2783-3dup Multiple submitters atypical hemolytic-uremic syndrome
  • c.3133+8G>T Multiple submitters age related macular degeneration 4
  • c.350+15C>T Multiple submitters basal laminar drusen
  • c.350+9T>C Multiple submitters basal laminar drusen
  • c.428-14T>C Multiple submitters basal laminar drusen
  • c.-124G>T Multiple submitters basal laminar drusen
  • p.Ala425= Multiple submitters
  • p.Asn1034= Multiple submitters basal laminar drusen
  • p.Asn1050= Multiple submitters basal laminar drusen
  • p.Asn1050Tyr Multiple submitters basal laminar drusen ⚠
  • p.Asn269= Multiple submitters hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Cys569= Multiple submitters age related macular degeneration 4
  • p.Glu936Asp Multiple submitters complement factor H deficiency ⚠
  • p.Gly879= Multiple submitters basal laminar drusen
  • p.His878= Multiple submitters basal laminar drusen
  • p.Ile1059Thr Multiple submitters age related macular degeneration 4 ⚠
  • p.Ile551Thr Multiple submitters basal laminar drusen ⚠
  • p.Pro982= Multiple submitters atypical hemolytic-uremic syndrome
  • p.Ser1069= Multiple submitters basal laminar drusen
  • p.Ser890Ile Multiple submitters age related macular degeneration 4
  • p.Thr1017Ile Multiple submitters basal laminar drusen ⚠
  • p.Thr1046= Multiple submitters hemolytic uremic syndrome, atypical, susceptibility to, 1
  • p.Tyr1058His Multiple submitters basal laminar drusen
  • p.Val1007Leu Multiple submitters atypical hemolytic-uremic syndrome
  • p.Val1060Leu Multiple submitters CFH-Related Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II
  • p.Val62Ile Multiple submitters complement factor H deficiency
  • p.Val837Ile Multiple submitters basal laminar drusen
  • p.Val941Phe Multiple submitters basal laminar drusen
  • c.-36G>C Single submitter age related macular degeneration 4

Likely benign 307

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 848

Showing the top 300 by review status; the full set is in the sitemap.