COL6A1 — 2015 ClinVar variants

All ClinVar germline COL6A1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 675 flagged for review →

101 Pathogenic · 33 Pathogenic/Likely pathogenic · 55 Likely pathogenic · 374 Conflicting · 203 Benign · 73 Benign/Likely benign · 643 Likely benign · 533 Uncertain significance

Full COL6A1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 675

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 3

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 140

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 220

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 220

Predictors split 312

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 312

All COL6A1 variants

Pathogenic 101

Pathogenic/Likely pathogenic 33

  • c.1056+1del Multiple submitters Bethlem myopathy 1A
  • c.1056+1G>A Multiple submitters Bethlem myopathy 1A
  • c.1056+2T>A Multiple submitters Bethlem myopathy 1A
  • c.1056+5G>A Multiple submitters Bethlem myopathy 1A
  • c.1575+1G>A Multiple submitters Bethlem myopathy 1A
  • c.1576-2_1576-1del Multiple submitters Bethlem myopathy 1A
  • c.2435-2A>G Multiple submitters Bethlem myopathy 1A
  • c.805-2A>C Multiple submitters Ullrich congenital muscular dystrophy 1A
  • c.859-1G>C Multiple submitters Bethlem myopathy 1A
  • c.904-2A>G Multiple submitters COL6A1-related disorder
  • c.904-39A>G Multiple submitters Bethlem myopathy 1A
  • c.930+189C>T Multiple submitters Ullrich congenital muscular dystrophy 1A
  • c.957_957+7del Multiple submitters Bethlem myopathy 1A
  • c.98-2_103del Multiple submitters Bethlem myopathy 1A
  • p.Arg565Ter Multiple submitters Bethlem myopathy 1A
  • p.Asp733fs Multiple submitters COL6A1-related disorder
  • p.Gln32Ter Multiple submitters Bethlem myopathy 1A
  • p.Gly263Val Multiple submitters Bethlem myopathy 1A
  • p.Gly269Arg Multiple submitters Inborn genetic diseases
  • p.Gly275Glu Multiple submitters collagen 6-related myopathy
  • p.Gly275Val Multiple submitters Inborn genetic diseases
  • p.Gly278Glu Multiple submitters Bethlem myopathy 1A
  • p.Gly281Glu Multiple submitters Ullrich congenital muscular dystrophy 1A
  • p.Gly284Arg Multiple submitters collagen 6-related myopathy
  • p.Gly287Arg Multiple submitters Bethlem myopathy 1A
  • p.Gly296Glu Multiple submitters Bethlem myopathy 1A
  • p.Gly296Val Multiple submitters Ullrich congenital muscular dystrophy 1A
  • p.Gly299Glu Multiple submitters Bethlem myopathy 1A
  • p.Gly305Glu Multiple submitters Bethlem myopathy 1A
  • p.Gly311Asp Multiple submitters Bethlem myopathy 1A
  • p.Gly380Arg Multiple submitters Bethlem myopathy 1A
  • p.Leu261fs Multiple submitters Bethlem myopathy 1A
  • p.Lys310del Multiple submitters Ullrich congenital muscular dystrophy 1A

Likely pathogenic 55

Conflicting classifications of pathogenicity 374

Showing the top 300 by review status; the full set is in the sitemap.

Benign 203

Benign/Likely benign 73

  • c.1002+37A>G Multiple submitters
  • c.1002+50C>A Multiple submitters
  • c.1003-15del Multiple submitters Bethlem myopathy 1A
  • c.1119+19del Multiple submitters Bethlem myopathy 1A
  • c.1119+39C>T Multiple submitters
  • c.1120-12G>A Multiple submitters Bethlem myopathy 1A
  • c.1182+3G>A Multiple submitters collagen 6-related myopathy
  • c.1273-8C>T Multiple submitters Bethlem myopathy 1A
  • c.1335+20G>C Multiple submitters Bethlem myopathy 1A
  • c.1336-15C>T Multiple submitters collagen 6-related myopathy
  • c.1336-17G>A Multiple submitters Bethlem myopathy 1A
  • c.1524+15G>A Multiple submitters collagen 6-related myopathy
  • c.1612-6C>T Multiple submitters Bethlem myopathy 1A
  • c.1740+50C>T Multiple submitters
  • c.1741-13G>A Multiple submitters Bethlem myopathy 1A
  • c.1776+13C>T Multiple submitters collagen 6-related myopathy
  • c.1823-13C>T Multiple submitters collagen 6-related myopathy
  • c.1823-31C>T Multiple submitters
  • c.2067-10T>C Multiple submitters collagen 6-related myopathy
  • c.2067-15C>T Multiple submitters Bethlem myopathy 1A
  • c.2250+6G>C Multiple submitters collagen 6-related myopathy
  • c.227+15C>T Multiple submitters Bethlem myopathy 1A
  • c.2434+15_2434+54del Multiple submitters Bethlem myopathy 1A
  • c.428+39C>G Multiple submitters
  • c.588+37A>G Multiple submitters
  • c.717+32C>T Multiple submitters
  • c.739-11del Multiple submitters Bethlem myopathy 1A
  • c.739-18C>T Multiple submitters Bethlem myopathy 1A
  • c.759+16G>A Multiple submitters Bethlem myopathy 1A
  • c.859-20C>T Multiple submitters
  • c.958-17G>A Multiple submitters Bethlem myopathy 1A
  • c.97+20G>A Multiple submitters Ullrich congenital muscular dystrophy 1A
  • c.*294G>A Multiple submitters collagen 6-related myopathy
  • c.*87C>T Multiple submitters collagen 6-related myopathy
  • p.Ala1026= Multiple submitters Bethlem myopathy 1A
  • p.Ala215= Multiple submitters collagen 6-related myopathy
  • p.Ala492Val Multiple submitters collagen 6-related myopathy
  • p.Ala874= Multiple submitters collagen 6-related myopathy
  • p.Arg783Gln Multiple submitters collagen 6-related myopathy
  • p.Arg850Ser Multiple submitters collagen 6-related myopathy
  • p.Arg928His Multiple submitters Bethlem myopathy 1A ⚠
  • p.Asn537= Multiple submitters collagen 6-related myopathy
  • p.Asn683= Multiple submitters Bethlem myopathy 1A
  • p.Asp352= Multiple submitters collagen 6-related myopathy
  • p.Asp393= Multiple submitters Bethlem myopathy 1A
  • p.Asp548= Multiple submitters Bethlem myopathy 1A
  • p.Asp592= Multiple submitters collagen 6-related myopathy
  • p.Cys611= Multiple submitters collagen 6-related myopathy
  • p.Gln808His Multiple submitters collagen 6-related myopathy
  • p.Glu481= Multiple submitters Bethlem myopathy 1A
  • p.Glu649Lys Multiple submitters Bethlem myopathy 1A
  • p.Glu956Lys Multiple submitters collagen 6-related myopathy ⚠
  • p.Gly108= Multiple submitters collagen 6-related myopathy
  • p.Gly170= Multiple submitters Bethlem myopathy 1A
  • p.Gly506= Multiple submitters collagen 6-related myopathy
  • p.His1018= Multiple submitters collagen 6-related myopathy
  • p.Ile327= Multiple submitters collagen 6-related myopathy
  • p.Ile955= Multiple submitters collagen 6-related myopathy
  • p.Leu597= Multiple submitters Bethlem myopathy 1A
  • p.Leu650= Multiple submitters Bethlem myopathy 1A
  • p.Leu687= Multiple submitters collagen 6-related myopathy
  • p.Leu920= Multiple submitters Bethlem myopathy 1A
  • p.Lys814Arg Multiple submitters collagen 6-related myopathy
  • p.Pro193= Multiple submitters collagen 6-related myopathy
  • p.Pro502= Multiple submitters collagen 6-related myopathy
  • p.Pro740= Multiple submitters Bethlem myopathy 1A
  • p.Ser839= Multiple submitters Bethlem myopathy 1A
  • p.Thr205= Multiple submitters Bethlem myopathy 1A
  • p.Thr710= Multiple submitters collagen 6-related myopathy
  • p.Thr823= Multiple submitters collagen 6-related myopathy
  • p.Thr881Met Multiple submitters collagen 6-related myopathy ⚠
  • p.Thr914= Multiple submitters collagen 6-related myopathy
  • p.Val333Met Multiple submitters collagen 6-related myopathy

Likely benign 643

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 533

Showing the top 300 by review status; the full set is in the sitemap.