CSRP3 — 473 ClinVar variants

All ClinVar germline CSRP3 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 227 flagged for review →

21 Pathogenic · 3 Pathogenic/Likely pathogenic · 11 Likely pathogenic · 33 Conflicting · 17 Benign · 8 Benign/Likely benign · 114 Likely benign · 266 Uncertain significance

Full CSRP3 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 227

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 13

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 143

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 70

The independent predictors disagree with each other — read with care.

All CSRP3 variants

Pathogenic 21

  • p.Cys58Gly Multiple submitters Cardiovascular phenotype
  • p.Tyr18fs Multiple submitters Cardiovascular phenotype
  • p.Arg100fs Single submitter dilated cardiomyopathy 1M
  • p.Arg28fs Single submitter hypertrophic cardiomyopathy 12
  • p.Gln24fs Single submitter hypertrophic cardiomyopathy 12
  • p.Gln93fs Single submitter hypertrophic cardiomyopathy 12
  • p.His19fs Single submitter hypertrophic cardiomyopathy 12
  • p.Ile149fs Single submitter dilated cardiomyopathy 1M
  • p.Ile56fs Single submitter hypertrophic cardiomyopathy 12
  • p.Lys113Ter Single submitter hypertrophic cardiomyopathy 12
  • p.Lys125Ter Single submitter hypertrophic cardiomyopathy 12
  • p.Lys42fs Single submitter
  • p.Lys9fs Single submitter dilated cardiomyopathy 1M
  • p.Ser126Ter Single submitter hypertrophic cardiomyopathy 12
  • p.Ser54Ter Single submitter dilated cardiomyopathy 1M
  • p.Tyr18Ter Single submitter dilated cardiomyopathy 1M
  • p.Tyr62Ter Single submitter hypertrophic cardiomyopathy 12
  • p.Val102fs Single submitter dilated cardiomyopathy 1M
  • p.Val17fs Single submitter hypertrophic cardiomyopathy 12
  • p.Ser54_Glu55delinsArgGly No assertion criteria hypertrophic cardiomyopathy 12
  • p.Trp140Cys No assertion criteria dilated cardiomyopathy

Pathogenic/Likely pathogenic 3

  • p.Arg122Ter Multiple submitters hypertrophic cardiomyopathy 12
  • p.Cys150Tyr Multiple submitters Cardiovascular phenotype
  • p.Cys37Ter Multiple submitters hypertrophic cardiomyopathy 12

Likely pathogenic 11

  • c.414+1G>T Multiple submitters Cardiovascular phenotype
  • c.281+1G>C Single submitter dilated cardiomyopathy 1M
  • c.281+2T>C Single submitter hypertrophic cardiomyopathy 12
  • c.414+1G>A Single submitter hypertrophic cardiomyopathy 12
  • c.414+1G>C Single submitter dilated cardiomyopathy 1M
  • p.Met1Thr Single submitter
  • p.Phe145Cys Single submitter hypertrophic cardiomyopathy
  • c.282-1G>A No assertion criteria cardiomyopathy
  • p.Glu118= No assertion criteria dilated cardiomyopathy
  • p.Lys32= No assertion criteria dilated cardiomyopathy
  • p.Thr16Ser No assertion criteria dilated cardiomyopathy ⚠

Conflicting classifications of pathogenicity 33

Benign 17

Benign/Likely benign 8

  • c.508+18C>T Multiple submitters Cardiovascular phenotype
  • c.508+9T>C Multiple submitters hypertrophic cardiomyopathy 12
  • c.509-20C>A Multiple submitters hypertrophic cardiomyopathy 12
  • c.*12G>A Multiple submitters hypertrophic cardiomyopathy 12
  • p.Ala50= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Ile71= Multiple submitters Cardiovascular phenotype
  • p.Lys109= Multiple submitters Cardiovascular phenotype
  • p.Thr104= Multiple submitters Cardiovascular phenotype

Likely benign 114

  • c.282-15G>A Multiple submitters dilated cardiomyopathy 1M
  • c.282-16C>A Multiple submitters hypertrophic cardiomyopathy 12
  • c.282-16C>T Multiple submitters hypertrophic cardiomyopathy 12
  • c.415-30T>C Multiple submitters
  • c.508+17A>T Multiple submitters hypertrophic cardiomyopathy 12
  • c.509-130C>T Multiple submitters
  • c.509-16C>T Multiple submitters hypertrophic cardiomyopathy 12
  • c.509-20C>T Multiple submitters dilated cardiomyopathy 1M
  • c.*450T>G Multiple submitters hypertrophic cardiomyopathy 12
  • p.Arg41= Multiple submitters Cardiovascular phenotype
  • p.Cys171= Multiple submitters dilated cardiomyopathy 1M
  • p.Cys40= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Cys58= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Glu155= Multiple submitters Cardiovascular phenotype
  • p.Glu86= Multiple submitters Cardiovascular phenotype
  • p.Gly5= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Gly7= Multiple submitters Cardiovascular phenotype
  • p.Gly74= Multiple submitters hypertrophic cardiomyopathy 12
  • p.His36= Multiple submitters hypertrophic cardiomyopathy 12
  • p.His87= Multiple submitters Cardiovascular phenotype
  • p.Leu80= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Leu88= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Lys113= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Lys152= Multiple submitters Cardiovascular phenotype
  • p.Phe30= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Ser117= Multiple submitters Cardiovascular phenotype
  • p.Thr103= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Thr16= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Thr84= Multiple submitters cardiomyopathy
  • p.Tyr172= Multiple submitters hypertrophic cardiomyopathy 12
  • p.Tyr66= Multiple submitters dilated cardiomyopathy 1M
  • p.Val49= Multiple submitters hypertrophic cardiomyopathy 12
  • c.112+11T>C Single submitter hypertrophic cardiomyopathy 12
  • c.112+12G>A Single submitter dilated cardiomyopathy 1M
  • c.112+18C>G Single submitter dilated cardiomyopathy 1M
  • c.112+19C>T Single submitter hypertrophic cardiomyopathy 12
  • c.112+245T>G Single submitter
  • c.112+9G>A Single submitter dilated cardiomyopathy 1M
  • c.113-17C>A Single submitter dilated cardiomyopathy 1M
  • c.113-17C>T Single submitter hypertrophic cardiomyopathy 12
  • c.113-20A>T Single submitter hypertrophic cardiomyopathy 12
  • c.113-39T>C Single submitter
  • c.281+17C>T Single submitter dilated cardiomyopathy 1M
  • c.281+19C>A Single submitter dilated cardiomyopathy 1M
  • c.281+25T>G Single submitter
  • c.282-18T>C Single submitter dilated cardiomyopathy 1M
  • c.282-19A>G Single submitter dilated cardiomyopathy 1M
  • c.282-214T>G Single submitter
  • c.414+14T>C Single submitter dilated cardiomyopathy 1M
  • c.414+16T>C Single submitter hypertrophic cardiomyopathy 12
  • c.414+18A>G Single submitter dilated cardiomyopathy 1M
  • c.414+19G>A Single submitter dilated cardiomyopathy 1M
  • c.414+19G>T Single submitter dilated cardiomyopathy 1M
  • c.414+264A>G Single submitter
  • c.414+7C>A Single submitter hypertrophic cardiomyopathy 12
  • c.414+7C>T Single submitter dilated cardiomyopathy 1M
  • c.414+8C>T Single submitter hypertrophic cardiomyopathy 12
  • c.415-11G>A Single submitter dilated cardiomyopathy 1M
  • c.415-13C>T Single submitter dilated cardiomyopathy 1M
  • c.415-16T>C Single submitter hypertrophic cardiomyopathy 12
  • c.415-18C>G Single submitter hypertrophic cardiomyopathy 12
  • c.415-5C>T Single submitter dilated cardiomyopathy 1M
  • c.415-6C>T Single submitter dilated cardiomyopathy 1M
  • c.415-9G>C Single submitter hypertrophic cardiomyopathy 12
  • c.508+113del Single submitter
  • c.508+17A>G Single submitter hypertrophic cardiomyopathy 12
  • c.508+7G>T Single submitter dilated cardiomyopathy 1M
  • c.508+9_508+15dup Single submitter dilated cardiomyopathy 1M
  • c.509-5C>T Single submitter hypertrophic cardiomyopathy 12
  • c.509-8A>G Single submitter hypertrophic cardiomyopathy 12
  • c.-226G>A Single submitter
  • c.-236G>C Single submitter
  • c.-54G>T Single submitter
  • c.-70C>T Single submitter
  • c.*174T>C Single submitter
  • c.*8C>G Single submitter
  • p.Ala12= Single submitter dilated cardiomyopathy 1M
  • p.Ala77= Single submitter dilated cardiomyopathy 1M
  • p.Ala99= Single submitter dilated cardiomyopathy 1M
  • p.Arg100= Single submitter dilated cardiomyopathy 1M
  • p.Arg28= Single submitter Cardiovascular phenotype
  • p.Asn26= Single submitter Cardiovascular phenotype
  • p.Cys120= Single submitter dilated cardiomyopathy 1M
  • p.Gln91= Single submitter dilated cardiomyopathy 1M
  • p.Gln93= Single submitter hypertrophic cardiomyopathy 12
  • p.Glu116= Single submitter dilated cardiomyopathy 1M
  • p.Glu155Asp Single submitter
  • p.Glu194= Single submitter Cardiovascular phenotype
  • p.Gly115= Single submitter dilated cardiomyopathy 1M
  • p.Gly137= Single submitter hypertrophic cardiomyopathy 12
  • p.Gly164= Single submitter dilated cardiomyopathy 1M
  • p.Gly63= Single submitter dilated cardiomyopathy 1M
  • p.Gly67= Single submitter hypertrophic cardiomyopathy 12
  • p.Gly70= Single submitter hypertrophic cardiomyopathy 12
  • p.Gly72= Single submitter Cardiovascular phenotype
  • p.Gly76= Single submitter Cardiovascular phenotype
  • p.Gly78= Single submitter dilated cardiomyopathy 1M
  • p.Gly89= Single submitter hypertrophic cardiomyopathy 12
  • p.His19= Single submitter Cardiovascular phenotype
  • p.His52= Single submitter hypertrophic cardiomyopathy 12
  • p.Leu90= Single submitter dilated cardiomyopathy 1M
  • p.Lys42= Single submitter hypertrophic cardiomyopathy 12
  • p.Pro98= Single submitter hypertrophic cardiomyopathy 12
  • p.Ser95= Single submitter dilated cardiomyopathy 1M
  • p.Thr111= Single submitter dilated cardiomyopathy 1M
  • p.Thr160= Single submitter dilated cardiomyopathy 1M
  • p.Thr47= Single submitter dilated cardiomyopathy 1M
  • p.Thr48= Single submitter hypertrophic cardiomyopathy 12
  • p.Thr82= Single submitter dilated cardiomyopathy 1M
  • p.Tyr167= Single submitter hypertrophic cardiomyopathy 12
  • p.Tyr18= Single submitter Cardiovascular phenotype
  • p.Tyr73= Single submitter
  • p.Val127= Single submitter hypertrophic cardiomyopathy 12
  • p.Val17= Single submitter dilated cardiomyopathy 1M

Uncertain significance 266