DDHD2 — 356 ClinVar variants

All ClinVar germline DDHD2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 153 flagged for review →

18 Pathogenic · 4 Pathogenic/Likely pathogenic · 16 Likely pathogenic · 14 Conflicting · 9 Benign · 8 Benign/Likely benign · 120 Likely benign · 167 Uncertain significance

Full DDHD2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 153

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 3

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 99

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 51

The independent predictors disagree with each other — read with care.

All DDHD2 variants

Pathogenic 18

  • p.Arg232Ter Multiple submitters hereditary spastic paraplegia 54
  • p.Arg329Ter Multiple submitters hereditary spastic paraplegia 54
  • p.Arg516Ter Multiple submitters hereditary spastic paraplegia 54
  • p.Tyr140Ter Multiple submitters hereditary spastic paraplegia 54
  • p.Arg112Ter Single submitter hereditary spastic paraplegia 54
  • p.Gln66Ter Single submitter hereditary spastic paraplegia 54
  • p.Glu414fs Single submitter hereditary spastic paraplegia 54
  • p.Gly510Glu Single submitter hereditary spastic paraplegia 54
  • p.His273fs Single submitter hereditary spastic paraplegia 54
  • p.Ile463fs Single submitter hereditary spastic paraplegia 54
  • p.Lys152fs Single submitter hereditary spastic paraplegia 54
  • p.Phe601fs Single submitter hereditary spastic paraplegia 54
  • p.Ser35fs Single submitter
  • p.Ser626Ter Single submitter Inborn genetic diseases
  • p.Trp115Ter Single submitter hereditary spastic paraplegia 54
  • p.Trp272Ter Single submitter hereditary spastic paraplegia 54
  • p.Glu686fs No assertion criteria hereditary spastic paraplegia 54
  • p.Thr602fs No assertion criteria hereditary spastic paraplegia 54

Pathogenic/Likely pathogenic 4

  • p.Asp660His Multiple submitters Inborn genetic diseases
  • p.Gln286Ter Multiple submitters hereditary spastic paraplegia 54
  • p.Lys124fs Multiple submitters hereditary spastic paraplegia 54
  • p.Arg287Ter No assertion criteria hereditary spastic paraplegia 54

Likely pathogenic 16

Conflicting classifications of pathogenicity 14

  • c.1057+5C>G Single submitter hereditary spastic paraplegia 54
  • p.Arg190Ter Single submitter hereditary spastic paraplegia 54
  • p.Arg242Cys Single submitter hereditary spastic paraplegia 54 ⚠
  • p.Arg242His Single submitter Inborn genetic diseases ⚠
  • p.Arg337= Single submitter hereditary spastic paraplegia
  • p.Asn462= Single submitter hereditary spastic paraplegia 54
  • p.Gly76Cys Single submitter hereditary spastic paraplegia 54 ⚠
  • p.Gly76Tyr Single submitter hereditary spastic paraplegia 54
  • p.Leu93= Single submitter hereditary spastic paraplegia 54
  • p.Ser131Arg Single submitter hereditary spastic paraplegia 54 ⚠
  • p.Ser233= Single submitter hereditary spastic paraplegia 54
  • p.Thr300Ile Single submitter hereditary spastic paraplegia 54 ⚠
  • p.Tyr525= Single submitter hereditary spastic paraplegia 54
  • p.Tyr661Cys Single submitter Inborn genetic diseases ⚠

Benign 9

Benign/Likely benign 8

  • p.Asp376Gly Multiple submitters hereditary spastic paraplegia
  • p.Cys683Ser Multiple submitters hereditary spastic paraplegia 54
  • p.Gln7= Multiple submitters hereditary spastic paraplegia 54
  • p.Gly76Asp Multiple submitters Inborn genetic diseases
  • p.Ile304= Multiple submitters hereditary spastic paraplegia 54
  • p.Leu390= Multiple submitters hereditary spastic paraplegia 54
  • p.Thr529= Multiple submitters hereditary spastic paraplegia 54
  • p.Tyr125= Multiple submitters hereditary spastic paraplegia 54

Likely benign 120

  • c.1058-13A>G Multiple submitters hereditary spastic paraplegia 54
  • c.1125+20A>C Multiple submitters hereditary spastic paraplegia 54
  • c.1126-146C>T Multiple submitters
  • c.1720+9G>A Multiple submitters hereditary spastic paraplegia 54
  • c.220+34A>G Multiple submitters
  • c.622+12C>T Multiple submitters hereditary spastic paraplegia 54
  • p.Ile288= Multiple submitters hereditary spastic paraplegia 54
  • p.Thr186= Multiple submitters hereditary spastic paraplegia 54
  • p.Tyr310= Multiple submitters hereditary spastic paraplegia 54
  • c.1057+18G>A Single submitter hereditary spastic paraplegia 54
  • c.1058-16_1058-14del Single submitter hereditary spastic paraplegia 54
  • c.1058-17T>C Single submitter hereditary spastic paraplegia 54
  • c.1125+20A>G Single submitter hereditary spastic paraplegia 54
  • c.1126-13A>G Single submitter hereditary spastic paraplegia 54
  • c.1249-16G>A Single submitter hereditary spastic paraplegia 54
  • c.1249-20A>G Single submitter hereditary spastic paraplegia 54
  • c.1249-235del Single submitter
  • c.1344+15C>T Single submitter hereditary spastic paraplegia 54
  • c.1345-18C>T Single submitter hereditary spastic paraplegia 54
  • c.1462-10C>T Single submitter hereditary spastic paraplegia 54
  • c.1462-19T>C Single submitter hereditary spastic paraplegia 54
  • c.1462-7del Single submitter hereditary spastic paraplegia 54
  • c.1617+6C>T Single submitter
  • c.1618-11T>C Single submitter hereditary spastic paraplegia 54
  • c.1618-63del Single submitter
  • c.1618-63dup Single submitter
  • c.1618-6A>G Single submitter hereditary spastic paraplegia 54
  • c.1618-6A>T Single submitter hereditary spastic paraplegia 54
  • c.1618-81C>A Single submitter
  • c.1618-8C>G Single submitter hereditary spastic paraplegia 54
  • c.1618-9C>T Single submitter hereditary spastic paraplegia 54
  • c.1720+18A>C Single submitter hereditary spastic paraplegia 54
  • c.1720+18A>G Single submitter hereditary spastic paraplegia 54
  • c.1721-11A>G Single submitter hereditary spastic paraplegia 54
  • c.1721-9A>G Single submitter hereditary spastic paraplegia 54
  • c.1891+19A>G Single submitter hereditary spastic paraplegia 54
  • c.1891+20T>C Single submitter hereditary spastic paraplegia 54
  • c.1892-127T>C Single submitter
  • c.1892-16G>T Single submitter hereditary spastic paraplegia 54
  • c.2054+10_2054+12del Single submitter hereditary spastic paraplegia 54
  • c.2054+13del Single submitter hereditary spastic paraplegia 54
  • c.2054+13T>C Single submitter
  • c.2055-17A>T Single submitter hereditary spastic paraplegia 54
  • c.2055-5T>C Single submitter hereditary spastic paraplegia 54
  • c.2055-6_2055-5del Single submitter hereditary spastic paraplegia 54
  • c.220+18C>T Single submitter hereditary spastic paraplegia 54
  • c.220+20T>G Single submitter hereditary spastic paraplegia 54
  • c.221-19C>T Single submitter hereditary spastic paraplegia 54
  • c.221-9C>T Single submitter hereditary spastic paraplegia 54
  • c.411+200_411+201dup Single submitter
  • c.412-11T>G Single submitter hereditary spastic paraplegia 54
  • c.412-8C>G Single submitter hereditary spastic paraplegia 54
  • c.501+172C>T Single submitter
  • c.502-19C>A Single submitter hereditary spastic paraplegia 54
  • c.502-7G>T Single submitter hereditary spastic paraplegia 54
  • c.502-9C>T Single submitter hereditary spastic paraplegia 54
  • c.622+13G>A Single submitter hereditary spastic paraplegia 54
  • c.622+260T>A Single submitter
  • c.623-262G>A Single submitter
  • c.623-57A>T Single submitter
  • c.849-16T>C Single submitter hereditary spastic paraplegia 54
  • c.849-18T>C Single submitter hereditary spastic paraplegia 54
  • c.849-20A>C Single submitter hereditary spastic paraplegia 54
  • c.*26+201G>C Single submitter
  • c.*28C>T Single submitter
  • p.Ala107= Single submitter hereditary spastic paraplegia 54
  • p.Ala454= Single submitter hereditary spastic paraplegia 54
  • p.Arg112Gln Single submitter hereditary spastic paraplegia 54
  • p.Arg196= Single submitter hereditary spastic paraplegia 54
  • p.Arg297= Single submitter
  • p.Arg595= Single submitter hereditary spastic paraplegia 54
  • p.Asn439= Single submitter hereditary spastic paraplegia 54
  • p.Asp180= Single submitter hereditary spastic paraplegia 54
  • p.Asp204= Single submitter hereditary spastic paraplegia 54
  • p.Gln708= Single submitter hereditary spastic paraplegia 54
  • p.Glu130= Single submitter hereditary spastic paraplegia 54
  • p.Glu392= Single submitter hereditary spastic paraplegia 54
  • p.Glu468= Single submitter hereditary spastic paraplegia 54
  • p.Glu623= Single submitter hereditary spastic paraplegia 54
  • p.Gly385= Single submitter hereditary spastic paraplegia 54
  • p.Gly449= Single submitter hereditary spastic paraplegia 54
  • p.Gly506= Single submitter hereditary spastic paraplegia 54
  • p.Gly554= Single submitter hereditary spastic paraplegia 54
  • p.His206= Single submitter hereditary spastic paraplegia 54
  • p.His252= Single submitter
  • p.His350= Single submitter
  • p.Ile485= Single submitter hereditary spastic paraplegia 54
  • p.Ile668= Single submitter hereditary spastic paraplegia 54
  • p.Leu290= Single submitter hereditary spastic paraplegia 54
  • p.Leu518= Single submitter hereditary spastic paraplegia 54
  • p.Leu590= Single submitter hereditary spastic paraplegia 54
  • p.Leu591= Single submitter hereditary spastic paraplegia 54
  • p.Leu646= Single submitter hereditary spastic paraplegia 54
  • p.Leu693= Single submitter hereditary spastic paraplegia 54
  • p.Lys151= Single submitter hereditary spastic paraplegia 54
  • p.Lys365= Single submitter hereditary spastic paraplegia 54
  • p.Lys396= Single submitter
  • p.Lys435= Single submitter hereditary spastic paraplegia 54
  • p.Phe341= Single submitter hereditary spastic paraplegia 54
  • p.Phe441= Single submitter
  • p.Phe557= Single submitter hereditary spastic paraplegia 54
  • p.Pro275= Single submitter hereditary spastic paraplegia 54
  • p.Pro433= Single submitter hereditary spastic paraplegia 54
  • p.Pro455= Single submitter hereditary spastic paraplegia 54
  • p.Pro455Leu Single submitter Inborn genetic diseases
  • p.Pro563= Single submitter hereditary spastic paraplegia 54
  • p.Ser292= Single submitter hereditary spastic paraplegia 54
  • p.Ser377= Single submitter hereditary spastic paraplegia 54
  • p.Ser593= Single submitter hereditary spastic paraplegia 54
  • p.Thr114= Single submitter hereditary spastic paraplegia 54
  • p.Thr322= Single submitter hereditary spastic paraplegia 54
  • p.Thr332= Single submitter hereditary spastic paraplegia 54
  • p.Thr389= Single submitter hereditary spastic paraplegia 54
  • p.Thr618= Single submitter
  • p.Thr690= Single submitter hereditary spastic paraplegia 54
  • p.Thr701= Single submitter hereditary spastic paraplegia 54
  • p.Tyr492= Single submitter
  • p.Tyr89= Single submitter hereditary spastic paraplegia 54
  • p.Val265= Single submitter
  • p.Val641= Single submitter hereditary spastic paraplegia 54

Uncertain significance 167