DDX59 — 167 ClinVar variants
All ClinVar germline DDX59 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 84 flagged for review →
4 Pathogenic · 1 Pathogenic/Likely pathogenic · 4 Likely pathogenic · 5 Conflicting · 17 Benign · 5 Benign/Likely benign · 40 Likely benign · 91 Uncertain significance
Full DDX59 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 84
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 5
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
DDX59 p.Asn411Ser
Conflicting
Single submitter
Inborn genetic diseases
- DDX59 p.Glu268Lys Conflicting Single submitter
-
DDX59 p.Ile405Val
Conflicting
Single submitter
Inborn genetic diseases
-
DDX59 p.Leu129Trp
Conflicting
Single submitter
Inborn genetic diseases
- DDX59 p.Val464Ala Conflicting Single submitter
Predictors lean, ClinVar uncertain 68
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
DDX59 p.Arg318His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
DDX59 p.Glu179Gly
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
DDX59 p.Glu30Lys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
DDX59 p.His400Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
DDX59 p.Ile9Met
Uncertain significance
Multiple submitters
Inborn genetic diseases
- DDX59 p.Ala255Val Uncertain significance Single submitter
-
DDX59 p.Ala265Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Ala355Val
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Ala545Thr Uncertain significance Single submitter
-
DDX59 p.Ala545Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Ala81Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Arg300Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Arg332Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Arg507Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Arg515Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Arg99His Uncertain significance Single submitter
-
DDX59 p.Asn150Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Asn373Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Asp155Gly Uncertain significance Single submitter
-
DDX59 p.Asp242Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Asp458Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Asp495Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Cys208Phe Uncertain significance Single submitter
-
DDX59 p.Cys345Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Gln194Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Gln596Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Gln68His Uncertain significance Single submitter
-
DDX59 p.Glu30Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Glu528Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Glu588Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Glu78Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Glu89Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Gly250Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Gly534Arg
Uncertain significance
Single submitter
orofaciodigital syndrome V
-
DDX59 p.Gly540Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.His400Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.His55Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.His612Arg
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.His73Arg Uncertain significance Single submitter
-
DDX59 p.Ile336Val
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Ile420Met Uncertain significance Single submitter
-
DDX59 p.Ile473Val
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Ile52Thr Uncertain significance Single submitter
- DDX59 p.Ile609Val Uncertain significance Single submitter
-
DDX59 p.Leu32Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Leu34Val Uncertain significance Single submitter
- DDX59 p.Lys121Glu Uncertain significance Single submitter
-
DDX59 p.Lys153Gln
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Lys338Met Uncertain significance Single submitter
-
DDX59 p.Lys430Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Met233Val Uncertain significance Single submitter
- DDX59 p.Met263Val Uncertain significance Single submitter
-
DDX59 p.Met301Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Met606Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Pro279Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Pro4Ala Uncertain significance Single submitter
-
DDX59 p.Pro579Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Ser165Phe Uncertain significance Single submitter
-
DDX59 p.Ser209Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Ser251Pro
Uncertain significance
Single submitter
orofaciodigital syndrome V
-
DDX59 p.Ser296Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Thr199Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Thr227Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Thr389Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Tyr529Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Val323Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Val42Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Val464Ile
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 11
The independent predictors disagree with each other — read with care.
-
DDX59 p.His171Tyr
Uncertain significance
Multiple submitters
orofaciodigital syndrome V
-
DDX59 p.Ile609Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
- DDX59 p.Tyr166Cys Likely benign Multiple submitters
-
DDX59 p.Arg264Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Asn519Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Leu556Val Uncertain significance Single submitter
-
DDX59 p.Met526Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Pro413Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- DDX59 p.Pro446Leu Benign Single submitter
-
DDX59 p.Val110Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
DDX59 p.Val91Phe
Uncertain significance
Single submitter
Inborn genetic diseases
All DDX59 variants
Pathogenic 4
- p.Phe62fs Multiple submitters orofaciodigital syndrome V
- p.Gln152Ter Single submitter
- p.Gln379fs Single submitter
- p.Ter620Leu Single submitter DDX59-related disorder
Pathogenic/Likely pathogenic 1
- p.Val367Gly Multiple submitters orofaciodigital syndrome V
Likely pathogenic 4
- c.1597-6T>G Single submitter orofaciodigital syndrome V
- c.804+1G>A Single submitter
- p.Lys142fs Single submitter
- p.Asn552del No assertion criteria orofaciodigital syndrome V
Conflicting classifications of pathogenicity 5
- p.Asn411Ser Single submitter Inborn genetic diseases ⚠
- p.Glu268Lys Single submitter ⚠
- p.Ile405Val Single submitter Inborn genetic diseases ⚠
- p.Leu129Trp Single submitter Inborn genetic diseases ⚠
- p.Val464Ala Single submitter ⚠
Benign 17
- c.1314+23A>G Multiple submitters orofaciodigital syndrome V
- c.1314+75G>T Multiple submitters
- c.1596+34C>A Multiple submitters
- c.972+81T>C Multiple submitters
- c.972+87A>G Multiple submitters
- p.Ile107Val Multiple submitters
- p.Pro103= Multiple submitters
- p.Ser477= Multiple submitters orofaciodigital syndrome V
- p.Val307Ile Multiple submitters
- c.1062+191C>T Single submitter
- c.1314+220T>A Single submitter
- c.1315-4T>G Single submitter
- c.972+150_972+151del Single submitter
- c.972+157G>A Single submitter
- p.Asn550= Single submitter
- p.Pro446Leu Single submitter ⚠
- p.Ser513Asn Single submitter
Benign/Likely benign 5
- c.1468-12T>G Multiple submitters
- p.His322= Multiple submitters
- p.Ile475Val Multiple submitters
- p.Ser84= Multiple submitters
- p.Thr544= Multiple submitters
Likely benign 40
- p.Ala50Pro Multiple submitters Inborn genetic diseases
- p.Gln366= Multiple submitters
- p.Leu316Ile Multiple submitters
- p.Leu359= Multiple submitters
- p.Phe443= Multiple submitters
- p.Ser57= Multiple submitters
- p.Ser84Thr Multiple submitters Inborn genetic diseases
- p.Thr601= Multiple submitters
- p.Tyr166Cys Multiple submitters ⚠
- c.1062+9del Single submitter
- c.1467+13A>G Single submitter
- c.805-8C>A Single submitter
- p.Ala44= Single submitter
- p.Ala81Val Single submitter Inborn genetic diseases
- p.Arg418His Single submitter
- p.Asn416Ser Single submitter
- p.Asp369= Single submitter
- p.Gln232= Single submitter
- p.Gln365= Single submitter
- p.Gly494= Single submitter
- p.His207= Single submitter
- p.Ile533Val Single submitter Inborn genetic diseases
- p.Leu137Val Single submitter
- p.Leu162= Single submitter
- p.Leu294= Single submitter
- p.Leu305= Single submitter
- p.Leu34= Single submitter
- p.Leu433= Single submitter
- p.Leu509= Single submitter
- p.Leu7= Single submitter
- p.Lys302Arg Single submitter Inborn genetic diseases
- p.Lys454= Single submitter
- p.Phe267= Single submitter
- p.Pro41= Single submitter
- p.Ser251= Single submitter
- p.Tyr223= Single submitter
- p.Val347Ile Single submitter Inborn genetic diseases
- p.Val42Ala Single submitter Inborn genetic diseases
- p.Asp28= No assertion criteria DDX59-related disorder
- p.Ile544Met No assertion criteria DDX59-related disorder
Uncertain significance 91
- p.Arg318His Multiple submitters Inborn genetic diseases ⚠
- p.Glu179Gly Multiple submitters Inborn genetic diseases ⚠
- p.Glu30Lys Multiple submitters Inborn genetic diseases ⚠
- p.His171Tyr Multiple submitters orofaciodigital syndrome V ⚠
- p.His400Gln Multiple submitters Inborn genetic diseases ⚠
- p.Ile609Asn Multiple submitters Inborn genetic diseases ⚠
- p.Ile9Met Multiple submitters Inborn genetic diseases ⚠
- p.Ala255Val Single submitter ⚠
- p.Ala265Val Single submitter Inborn genetic diseases ⚠
- p.Ala355Val Single submitter Inborn genetic diseases ⚠
- p.Ala545Thr Single submitter ⚠
- p.Ala545Val Single submitter Inborn genetic diseases ⚠
- p.Ala81Pro Single submitter Inborn genetic diseases ⚠
- p.Arg113His Single submitter Inborn genetic diseases
- p.Arg264Leu Single submitter Inborn genetic diseases ⚠
- p.Arg300Cys Single submitter Inborn genetic diseases ⚠
- p.Arg318Cys Single submitter Inborn genetic diseases
- p.Arg332Gln Single submitter Inborn genetic diseases ⚠
- p.Arg507Gln Single submitter Inborn genetic diseases ⚠
- p.Arg515Gly Single submitter Inborn genetic diseases ⚠
- p.Arg563Ter Single submitter
- p.Arg99His Single submitter ⚠
- p.Asn150Lys Single submitter Inborn genetic diseases ⚠
- p.Asn373Asp Single submitter Inborn genetic diseases ⚠
- p.Asn519Ser Single submitter Inborn genetic diseases ⚠
- p.Asp155Gly Single submitter ⚠
- p.Asp242Asn Single submitter Inborn genetic diseases ⚠
- p.Asp458Asn Single submitter Inborn genetic diseases ⚠
- p.Asp495Glu Single submitter Inborn genetic diseases ⚠
- p.Cys208Phe Single submitter ⚠
- p.Cys345Trp Single submitter Inborn genetic diseases ⚠
- p.Gln194Arg Single submitter Inborn genetic diseases ⚠
- p.Gln364His Single submitter Inborn genetic diseases
- p.Gln596Lys Single submitter Inborn genetic diseases ⚠
- p.Gln68His Single submitter ⚠
- p.Glu30Gln Single submitter Inborn genetic diseases ⚠
- p.Glu497= Single submitter
- p.Glu528Asp Single submitter Inborn genetic diseases ⚠
- p.Glu588Gly Single submitter Inborn genetic diseases ⚠
- p.Glu78Lys Single submitter Inborn genetic diseases ⚠
- p.Glu89Asp Single submitter Inborn genetic diseases ⚠
- p.Gly250Ser Single submitter Inborn genetic diseases ⚠
- p.Gly534Arg Single submitter orofaciodigital syndrome V ⚠
- p.Gly540Arg Single submitter Inborn genetic diseases ⚠
- p.His400Tyr Single submitter Inborn genetic diseases ⚠
- p.His55Arg Single submitter Inborn genetic diseases ⚠
- p.His612Arg Single submitter Inborn genetic diseases ⚠
- p.His73Arg Single submitter ⚠
- p.Ile118Met Single submitter Inborn genetic diseases
- p.Ile336Val Single submitter Inborn genetic diseases ⚠
- p.Ile420Met Single submitter ⚠
- p.Ile473Val Single submitter Inborn genetic diseases ⚠
- p.Ile52Thr Single submitter ⚠
- p.Ile609Val Single submitter ⚠
- p.Leu137del Single submitter
- p.Leu32Phe Single submitter Inborn genetic diseases ⚠
- p.Leu34Val Single submitter ⚠
- p.Leu556Val Single submitter ⚠
- p.Lys121Glu Single submitter ⚠
- p.Lys153Gln Single submitter Inborn genetic diseases ⚠
- p.Lys338Met Single submitter ⚠
- p.Lys430Glu Single submitter Inborn genetic diseases ⚠
- p.Lys585Ter Single submitter
- p.Met233Val Single submitter ⚠
- p.Met263Val Single submitter ⚠
- p.Met301Val Single submitter Inborn genetic diseases ⚠
- p.Met526Thr Single submitter Inborn genetic diseases ⚠
- p.Met606Thr Single submitter Inborn genetic diseases ⚠
- p.Pro279Thr Single submitter Inborn genetic diseases ⚠
- p.Pro313Ser Single submitter
- p.Pro388Ser Single submitter Inborn genetic diseases
- p.Pro413Thr Single submitter Inborn genetic diseases ⚠
- p.Pro445Leu Single submitter Inborn genetic diseases
- p.Pro445Ser Single submitter Inborn genetic diseases
- p.Pro4Ala Single submitter ⚠
- p.Pro579Ser Single submitter Inborn genetic diseases ⚠
- p.Ser165Phe Single submitter ⚠
- p.Ser209Asn Single submitter Inborn genetic diseases ⚠
- p.Ser251Pro Single submitter orofaciodigital syndrome V ⚠
- p.Ser296Asn Single submitter Inborn genetic diseases ⚠
- p.Thr199Ile Single submitter Inborn genetic diseases ⚠
- p.Thr227Ile Single submitter Inborn genetic diseases ⚠
- p.Thr389Ser Single submitter Inborn genetic diseases ⚠
- p.Tyr529Cys Single submitter Inborn genetic diseases ⚠
- p.Val110Phe Single submitter Inborn genetic diseases ⚠
- p.Val323Ile Single submitter Inborn genetic diseases ⚠
- p.Val383= Single submitter
- p.Val42Ile Single submitter Inborn genetic diseases ⚠
- p.Val464Ile Single submitter Inborn genetic diseases ⚠
- p.Val91Phe Single submitter Inborn genetic diseases ⚠
- p.His400fs No assertion criteria DDX59-related disorder