DNAAF1 — 752 ClinVar variants

All ClinVar germline DNAAF1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 328 flagged for review →

41 Pathogenic · 7 Pathogenic/Likely pathogenic · 15 Likely pathogenic · 54 Conflicting · 58 Benign · 31 Benign/Likely benign · 212 Likely benign · 334 Uncertain significance

Full DNAAF1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 328

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 20

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 233

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 233

Predictors split 74

The independent predictors disagree with each other — read with care.

All DNAAF1 variants

Pathogenic 41

  • p.Arg636Ter Multiple submitters Respiratory ciliopathies including non-CF bronchiectasis
  • p.Gln260Ter Multiple submitters primary ciliary dyskinesia
  • p.Pro451fs Multiple submitters DNAAF1-related disorders
  • p.Tyr264Ter Multiple submitters DNAAF1-related disorders
  • c.(?_-181 Single submitter primary ciliary dyskinesia
  • p.Ala291fs Single submitter primary ciliary dyskinesia 13
  • p.Arg271Ter Single submitter primary ciliary dyskinesia
  • p.Arg312fs Single submitter primary ciliary dyskinesia
  • p.Arg488Ter Single submitter primary ciliary dyskinesia
  • p.Arg644Ter Single submitter primary ciliary dyskinesia 13
  • p.Asn605fs Single submitter primary ciliary dyskinesia
  • p.Cys155fs Single submitter primary ciliary dyskinesia
  • p.Gln20Ter Single submitter primary ciliary dyskinesia
  • p.Gln217Ter Single submitter primary ciliary dyskinesia
  • p.Gln308Ter Single submitter primary ciliary dyskinesia
  • p.Gln341fs Single submitter primary ciliary dyskinesia
  • p.Glu148Ter Single submitter primary ciliary dyskinesia
  • p.Glu170fs Single submitter primary ciliary dyskinesia
  • p.Glu428Ter Single submitter primary ciliary dyskinesia 13
  • p.Glu484Ter Single submitter primary ciliary dyskinesia
  • p.Glu509Ter Single submitter primary ciliary dyskinesia
  • p.Glu540Ter Single submitter primary ciliary dyskinesia
  • p.Glu653Ter Single submitter primary ciliary dyskinesia
  • p.Gly11fs Single submitter primary ciliary dyskinesia
  • p.Gly69fs Single submitter primary ciliary dyskinesia
  • p.Ile49fs Single submitter primary ciliary dyskinesia
  • p.Leu172fs Single submitter primary ciliary dyskinesia
  • p.Leu646fs Single submitter primary ciliary dyskinesia
  • p.Leu96fs Single submitter primary ciliary dyskinesia
  • p.Lys315Ter Single submitter primary ciliary dyskinesia
  • p.Pro106fs Single submitter primary ciliary dyskinesia
  • p.Pro447fs Single submitter primary ciliary dyskinesia
  • p.Pro478_Val479insTer Single submitter primary ciliary dyskinesia
  • p.Pro495fs Single submitter primary ciliary dyskinesia
  • p.Pro499fs Single submitter primary ciliary dyskinesia 13
  • p.Ser239fs Single submitter primary ciliary dyskinesia
  • p.Ser583fs Single submitter primary ciliary dyskinesia
  • p.Thr111fs Single submitter primary ciliary dyskinesia
  • p.Thr536fs Single submitter primary ciliary dyskinesia
  • c.124+1536_353-2102del No assertion criteria primary ciliary dyskinesia 13
  • p.Leu175Arg No assertion criteria primary ciliary dyskinesia 13

Pathogenic/Likely pathogenic 7

  • c.124+2T>G Multiple submitters DNAAF1-related disorders
  • p.Arg338fs Multiple submitters DNAAF1-related disorders
  • p.Gln329Ter Multiple submitters DNAAF1-related disorder
  • p.Gln64Ter Multiple submitters DNAAF1-related disorders
  • p.Gly434fs Multiple submitters primary ciliary dyskinesia 13
  • p.Lys626Ter Multiple submitters DNAAF1-related disorders
  • c.1528+2T>C No assertion criteria

Likely pathogenic 15

  • p.Leu232Val Multiple submitters DNAAF1-related disorders ⚠
  • c.1031-2A>G Single submitter primary ciliary dyskinesia 13
  • c.124+1G>A Single submitter primary ciliary dyskinesia 13
  • c.2065+1G>A Single submitter primary ciliary dyskinesia 13
  • c.741+2T>G Single submitter primary ciliary dyskinesia
  • p.Arg36Ter Single submitter primary ciliary dyskinesia
  • p.Asp110fs Single submitter DNAAF1-related disorders
  • p.Glu406fs Single submitter primary ciliary dyskinesia 13
  • p.Gly29fs Single submitter primary ciliary dyskinesia 13
  • p.Leu131fs Single submitter DNAAF1-related disorders
  • p.Leu247Ter Single submitter primary ciliary dyskinesia 13
  • p.Leu473fs Single submitter primary ciliary dyskinesia 13
  • p.Val429fs Single submitter primary ciliary dyskinesia 13
  • c.575-1G>C No assertion criteria DNAAF1-related disorder
  • p.Tyr277Ter No assertion criteria primary ciliary dyskinesia

Conflicting classifications of pathogenicity 54

Benign 58

Benign/Likely benign 31

  • c.1030+11_1030+22del Multiple submitters primary ciliary dyskinesia
  • c.1030+14C>T Multiple submitters primary ciliary dyskinesia 13
  • c.1529-17TTG[2] Multiple submitters primary ciliary dyskinesia
  • c.1644+14T>C Multiple submitters primary ciliary dyskinesia
  • c.352+17G>C Multiple submitters primary ciliary dyskinesia
  • c.864-17_864-14del Multiple submitters primary ciliary dyskinesia
  • c.*18T>C Multiple submitters primary ciliary dyskinesia 13
  • p.Ala359= Multiple submitters primary ciliary dyskinesia 13
  • p.Arg121Cys Multiple submitters primary ciliary dyskinesia 13 ⚠
  • p.Arg330= Multiple submitters primary ciliary dyskinesia
  • p.Asp246Asn Multiple submitters primary ciliary dyskinesia 13
  • p.Asp435Asn Multiple submitters primary ciliary dyskinesia 13 ⚠
  • p.Asp459Glu Multiple submitters primary ciliary dyskinesia 13 ⚠
  • p.Asp584Asn Multiple submitters primary ciliary dyskinesia 13
  • p.Gln260His Multiple submitters primary ciliary dyskinesia
  • p.Gln307Glu Multiple submitters primary ciliary dyskinesia 13
  • p.Glu432Asp Multiple submitters primary ciliary dyskinesia 13 ⚠
  • p.Gly703Arg Multiple submitters primary ciliary dyskinesia 13
  • p.His229Tyr Multiple submitters primary ciliary dyskinesia
  • p.His76= Multiple submitters primary ciliary dyskinesia 13
  • p.Leu539Pro Multiple submitters primary ciliary dyskinesia
  • p.Leu598= Multiple submitters primary ciliary dyskinesia 13
  • p.Leu633Ser Multiple submitters primary ciliary dyskinesia 13
  • p.Leu659Pro Multiple submitters primary ciliary dyskinesia
  • p.Leu659Val Multiple submitters primary ciliary dyskinesia 13
  • p.Lys393Arg Multiple submitters primary ciliary dyskinesia 13
  • p.Phe607Ser Multiple submitters primary ciliary dyskinesia ⚠
  • p.Pro502Leu Multiple submitters primary ciliary dyskinesia
  • p.Pro712Ala Multiple submitters primary ciliary dyskinesia
  • p.Ser675Thr Multiple submitters primary ciliary dyskinesia
  • p.Thr590Met Multiple submitters primary ciliary dyskinesia

Likely benign 212

  • c.1030+15G>A Multiple submitters primary ciliary dyskinesia
  • c.1645-9C>A Multiple submitters primary ciliary dyskinesia
  • c.2065+16C>T Multiple submitters primary ciliary dyskinesia
  • c.863+13A>G Multiple submitters primary ciliary dyskinesia
  • c.863+17C>G Multiple submitters primary ciliary dyskinesia
  • p.Ala291= Multiple submitters primary ciliary dyskinesia
  • p.Arg538= Multiple submitters primary ciliary dyskinesia
  • p.Asn139= Multiple submitters
  • p.Asn230= Multiple submitters primary ciliary dyskinesia
  • p.Asp387= Multiple submitters primary ciliary dyskinesia
  • p.Asp459= Multiple submitters primary ciliary dyskinesia
  • p.Asp612= Multiple submitters primary ciliary dyskinesia
  • p.Glu439= Multiple submitters primary ciliary dyskinesia
  • p.Gly11= Multiple submitters primary ciliary dyskinesia
  • p.Gly38= Multiple submitters primary ciliary dyskinesia
  • p.Gly38Ala Multiple submitters primary ciliary dyskinesia
  • p.Ile144= Multiple submitters primary ciliary dyskinesia
  • p.Leu112= Multiple submitters primary ciliary dyskinesia
  • p.Leu200= Multiple submitters primary ciliary dyskinesia
  • p.Leu377= Multiple submitters primary ciliary dyskinesia
  • p.Leu389= Multiple submitters primary ciliary dyskinesia
  • p.Leu603= Multiple submitters primary ciliary dyskinesia
  • p.Leu633= Multiple submitters primary ciliary dyskinesia
  • p.Leu650= Multiple submitters primary ciliary dyskinesia
  • p.Phe74= Multiple submitters primary ciliary dyskinesia
  • p.Pro235= Multiple submitters primary ciliary dyskinesia
  • p.Pro256= Multiple submitters primary ciliary dyskinesia
  • p.Pro356= Multiple submitters primary ciliary dyskinesia
  • p.Pro394= Multiple submitters primary ciliary dyskinesia
  • p.Pro399= Multiple submitters primary ciliary dyskinesia
  • p.Pro452= Multiple submitters primary ciliary dyskinesia
  • p.Pro477= Multiple submitters primary ciliary dyskinesia
  • p.Pro571= Multiple submitters primary ciliary dyskinesia
  • p.Pro722= Multiple submitters primary ciliary dyskinesia
  • p.Ser228= Multiple submitters primary ciliary dyskinesia
  • p.Ser57= Multiple submitters primary ciliary dyskinesia
  • p.Ser577= Multiple submitters primary ciliary dyskinesia
  • p.Ser580= Multiple submitters primary ciliary dyskinesia
  • p.Ser680= Multiple submitters primary ciliary dyskinesia
  • p.Thr105= Multiple submitters primary ciliary dyskinesia
  • p.Thr529= Multiple submitters primary ciliary dyskinesia
  • p.Thr531= Multiple submitters primary ciliary dyskinesia
  • p.Thr602= Multiple submitters primary ciliary dyskinesia
  • p.Val453= Multiple submitters primary ciliary dyskinesia
  • c.1030+10C>T Single submitter primary ciliary dyskinesia
  • c.1030+113_1030+115del Single submitter
  • c.1030+14C>G Single submitter primary ciliary dyskinesia
  • c.1030+19A>C Single submitter primary ciliary dyskinesia
  • c.1030+64C>G Single submitter
  • c.1030+7G>A Single submitter primary ciliary dyskinesia
  • c.1030+8C>T Single submitter primary ciliary dyskinesia
  • c.1031-18T>C Single submitter primary ciliary dyskinesia
  • c.124+11C>T Single submitter primary ciliary dyskinesia
  • c.124+12C>T Single submitter primary ciliary dyskinesia
  • c.124+16C>T Single submitter primary ciliary dyskinesia
  • c.124+20G>C Single submitter primary ciliary dyskinesia
  • c.125-10T>C Single submitter primary ciliary dyskinesia
  • c.1529-11T>C Single submitter primary ciliary dyskinesia
  • c.1529-17T>A Single submitter primary ciliary dyskinesia
  • c.1529-18C>G Single submitter primary ciliary dyskinesia
  • c.1644+17dup Single submitter primary ciliary dyskinesia
  • c.1645-19G>C Single submitter primary ciliary dyskinesia
  • c.1645-20C>T Single submitter primary ciliary dyskinesia
  • c.1645-308A>T Single submitter
  • c.1645-9C>T Single submitter primary ciliary dyskinesia
  • c.1698+8T>A Single submitter primary ciliary dyskinesia
  • c.1698+9C>T Single submitter primary ciliary dyskinesia
  • c.1699-13C>T Single submitter primary ciliary dyskinesia
  • c.1699-19C>A Single submitter primary ciliary dyskinesia
  • c.1699-5A>C Single submitter primary ciliary dyskinesia
  • c.1699-9del Single submitter primary ciliary dyskinesia
  • c.2065+17G>A Single submitter primary ciliary dyskinesia
  • c.2065+20A>G Single submitter primary ciliary dyskinesia
  • c.2065+7G>C Single submitter
  • c.2065+8C>T Single submitter primary ciliary dyskinesia
  • c.2065+9G>A Single submitter primary ciliary dyskinesia
  • c.2065+9G>C Single submitter
  • c.2065+9G>T Single submitter primary ciliary dyskinesia
  • c.260+7G>A Single submitter primary ciliary dyskinesia
  • c.261-11C>T Single submitter primary ciliary dyskinesia
  • c.261-11del Single submitter primary ciliary dyskinesia
  • c.261-14T>C Single submitter primary ciliary dyskinesia
  • c.261-20A>G Single submitter primary ciliary dyskinesia
  • c.352+13G>C Single submitter primary ciliary dyskinesia
  • c.352+15G>C Single submitter primary ciliary dyskinesia
  • c.352+9C>A Single submitter primary ciliary dyskinesia
  • c.353-19C>T Single submitter primary ciliary dyskinesia
  • c.353-5G>A Single submitter primary ciliary dyskinesia
  • c.574+11C>T Single submitter primary ciliary dyskinesia
  • c.574+332G>C Single submitter
  • c.575-10T>A Single submitter primary ciliary dyskinesia
  • c.575-119G>A Single submitter
  • c.575-11T>C Single submitter primary ciliary dyskinesia
  • c.575-15G>A Single submitter
  • c.575-18G>T Single submitter primary ciliary dyskinesia
  • c.575-20C>T Single submitter primary ciliary dyskinesia
  • c.575-46C>A Single submitter
  • c.575-75G>A Single submitter
  • c.741+4AAAAAC[4] Single submitter primary ciliary dyskinesia
  • c.742-12G>A Single submitter primary ciliary dyskinesia
  • c.742-677T>C Single submitter
  • c.742-6T>C Single submitter primary ciliary dyskinesia
  • c.742-7C>G Single submitter primary ciliary dyskinesia
  • c.863+307C>G Single submitter
  • c.863+8G>A Single submitter primary ciliary dyskinesia
  • c.864-12T>C Single submitter primary ciliary dyskinesia
  • c.864-20T>G Single submitter primary ciliary dyskinesia
  • c.-19C>T Single submitter
  • c.*67T>C Single submitter primary ciliary dyskinesia 13
  • p.Ala107= Single submitter primary ciliary dyskinesia
  • p.Ala13= Single submitter primary ciliary dyskinesia
  • p.Ala149= Single submitter primary ciliary dyskinesia
  • p.Ala28= Single submitter primary ciliary dyskinesia
  • p.Ala300= Single submitter primary ciliary dyskinesia
  • p.Ala34= Single submitter primary ciliary dyskinesia
  • p.Ala507= Single submitter primary ciliary dyskinesia
  • p.Ala669= Single submitter primary ciliary dyskinesia
  • p.Ala685= Single submitter primary ciliary dyskinesia
  • p.Ala718= Single submitter primary ciliary dyskinesia
  • p.Ala9= Single submitter primary ciliary dyskinesia
  • p.Arg221= Single submitter primary ciliary dyskinesia
  • p.Arg314= Single submitter primary ciliary dyskinesia
  • p.Arg336Lys Single submitter primary ciliary dyskinesia
  • p.Arg36Pro Single submitter primary ciliary dyskinesia
  • p.Arg678= Single submitter
  • p.Asn109= Single submitter primary ciliary dyskinesia
  • p.Asn146= Single submitter primary ciliary dyskinesia
  • p.Asn182= Single submitter primary ciliary dyskinesia
  • p.Asp485= Single submitter primary ciliary dyskinesia
  • p.Asp555= Single submitter primary ciliary dyskinesia
  • p.Asp557= Single submitter primary ciliary dyskinesia
  • p.Asp601= Single submitter primary ciliary dyskinesia
  • p.Asp652= Single submitter primary ciliary dyskinesia
  • p.Asp654= Single submitter primary ciliary dyskinesia
  • p.Gln666= Single submitter primary ciliary dyskinesia
  • p.Gln94= Single submitter primary ciliary dyskinesia
  • p.Glu218= Single submitter primary ciliary dyskinesia
  • p.Glu26= Single submitter primary ciliary dyskinesia
  • p.Glu313= Single submitter primary ciliary dyskinesia
  • p.Glu332= Single submitter primary ciliary dyskinesia
  • p.Glu406= Single submitter primary ciliary dyskinesia
  • p.Glu428= Single submitter primary ciliary dyskinesia
  • p.Glu458= Single submitter primary ciliary dyskinesia
  • p.Glu484= Single submitter primary ciliary dyskinesia
  • p.Glu491= Single submitter primary ciliary dyskinesia
  • p.Glu519= Single submitter primary ciliary dyskinesia
  • p.Glu628Ala Single submitter primary ciliary dyskinesia
  • p.Gly32= Single submitter primary ciliary dyskinesia
  • p.Gly344= Single submitter primary ciliary dyskinesia
  • p.Gly35= Single submitter primary ciliary dyskinesia
  • p.Gly367= Single submitter primary ciliary dyskinesia
  • p.Gly434= Single submitter primary ciliary dyskinesia
  • p.Gly440= Single submitter primary ciliary dyskinesia
  • p.Gly486= Single submitter primary ciliary dyskinesia
  • p.Gly505= Single submitter primary ciliary dyskinesia
  • p.Gly85= Single submitter primary ciliary dyskinesia
  • p.Ile104= Single submitter primary ciliary dyskinesia
  • p.Ile317= Single submitter primary ciliary dyskinesia
  • p.Ile537= Single submitter primary ciliary dyskinesia
  • p.Ile573= Single submitter primary ciliary dyskinesia
  • p.Ile624= Single submitter primary ciliary dyskinesia
  • p.Leu131= Single submitter primary ciliary dyskinesia
  • p.Leu158= Single submitter primary ciliary dyskinesia
  • p.Leu163= Single submitter
  • p.Leu238= Single submitter primary ciliary dyskinesia
  • p.Leu250= Single submitter primary ciliary dyskinesia
  • p.Leu421= Single submitter primary ciliary dyskinesia
  • p.Leu504= Single submitter primary ciliary dyskinesia
  • p.Leu526= Single submitter primary ciliary dyskinesia
  • p.Leu592= Single submitter primary ciliary dyskinesia
  • p.Leu93= Single submitter primary ciliary dyskinesia
  • p.Lys174= Single submitter primary ciliary dyskinesia
  • p.Lys231= Single submitter primary ciliary dyskinesia
  • p.Lys362= Single submitter primary ciliary dyskinesia
  • p.Lys40= Single submitter primary ciliary dyskinesia
  • p.Lys47Asn Single submitter primary ciliary dyskinesia
  • p.Lys542= Single submitter primary ciliary dyskinesia
  • p.Phe119= Single submitter
  • p.Phe682Leu Single submitter primary ciliary dyskinesia
  • p.Phe719Leu Single submitter primary ciliary dyskinesia
  • p.Pro22= Single submitter primary ciliary dyskinesia
  • p.Pro366= Single submitter primary ciliary dyskinesia
  • p.Pro503= Single submitter primary ciliary dyskinesia
  • p.Pro511= Single submitter primary ciliary dyskinesia
  • p.Pro513= Single submitter primary ciliary dyskinesia
  • p.Pro585= Single submitter primary ciliary dyskinesia
  • p.Pro663= Single submitter
  • p.Pro671= Single submitter primary ciliary dyskinesia
  • p.Ser320= Single submitter primary ciliary dyskinesia
  • p.Ser424= Single submitter primary ciliary dyskinesia
  • p.Ser425= Single submitter primary ciliary dyskinesia
  • p.Ser651= Single submitter primary ciliary dyskinesia
  • p.Ter726= Single submitter primary ciliary dyskinesia
  • p.Thr111= Single submitter primary ciliary dyskinesia
  • p.Thr187= Single submitter primary ciliary dyskinesia
  • p.Thr199= Single submitter primary ciliary dyskinesia
  • p.Thr318= Single submitter primary ciliary dyskinesia
  • p.Thr347= Single submitter primary ciliary dyskinesia
  • p.Thr467= Single submitter primary ciliary dyskinesia
  • p.Thr472= Single submitter primary ciliary dyskinesia
  • p.Thr493= Single submitter primary ciliary dyskinesia
  • p.Thr512Ala Single submitter
  • p.Thr590= Single submitter primary ciliary dyskinesia
  • p.Thr600Ala Single submitter primary ciliary dyskinesia
  • p.Thr664= Single submitter primary ciliary dyskinesia
  • p.Thr673= Single submitter primary ciliary dyskinesia
  • p.Thr691= Single submitter
  • p.Thr700= Single submitter primary ciliary dyskinesia
  • p.Tyr113= Single submitter primary ciliary dyskinesia
  • p.Val196= Single submitter primary ciliary dyskinesia
  • p.Val51= Single submitter primary ciliary dyskinesia
  • p.Val702= Single submitter primary ciliary dyskinesia

Uncertain significance 334

Showing the top 300 by review status; the full set is in the sitemap.