ELFN1 — 201 ClinVar variants
All ClinVar germline ELFN1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 165 flagged for review →
4 Pathogenic · 1 Pathogenic/Likely pathogenic · 2 Conflicting · 13 Benign · 1 Benign/Likely benign · 18 Likely benign · 162 Uncertain significance
Full ELFN1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 165
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 1
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 109
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- ELFN1 p.Ala177Thr Uncertain significance Single submitter
- ELFN1 p.Ala207Thr Uncertain significance Single submitter
- ELFN1 p.Ala25Val Uncertain significance Single submitter
- ELFN1 p.Ala305Ser Uncertain significance Single submitter
- ELFN1 p.Ala435Thr Uncertain significance Single submitter
- ELFN1 p.Ala481Thr Uncertain significance Single submitter
- ELFN1 p.Ala493Thr Uncertain significance Single submitter
- ELFN1 p.Ala502Thr Uncertain significance Single submitter
- ELFN1 p.Ala515Thr Uncertain significance Single submitter
- ELFN1 p.Ala515Val Uncertain significance Single submitter
- ELFN1 p.Ala575Thr Uncertain significance Single submitter
- ELFN1 p.Ala575Val Uncertain significance Single submitter
- ELFN1 p.Ala619Thr Uncertain significance Single submitter
- ELFN1 p.Ala632Asp Uncertain significance Single submitter
- ELFN1 p.Ala638Ser Uncertain significance Single submitter
- ELFN1 p.Ala651Thr Uncertain significance Single submitter
- ELFN1 p.Ala713Pro Uncertain significance Single submitter
- ELFN1 p.Arg119Gln Uncertain significance Single submitter
- ELFN1 p.Arg236His Uncertain significance Single submitter
- ELFN1 p.Arg240His Uncertain significance Single submitter
- ELFN1 p.Arg269Ser Uncertain significance Single submitter
- ELFN1 p.Arg367His Uncertain significance Single submitter
- ELFN1 p.Arg444Gln Uncertain significance Single submitter
- ELFN1 p.Arg496Cys Uncertain significance Single submitter
- ELFN1 p.Arg529Gln Uncertain significance Single submitter
- ELFN1 p.Arg536His Uncertain significance Single submitter
- ELFN1 p.Arg536Leu Uncertain significance Single submitter
- ELFN1 p.Arg536Ser Uncertain significance Single submitter
- ELFN1 p.Arg543Gln Uncertain significance Single submitter
- ELFN1 p.Arg650Leu Uncertain significance Single submitter
- ELFN1 p.Arg653Gln Uncertain significance Single submitter
- ELFN1 p.Arg66Gln Uncertain significance Single submitter
- ELFN1 p.Arg732His Uncertain significance Single submitter
- ELFN1 p.Arg801Cys Uncertain significance Single submitter
- ELFN1 p.Asn109Ile Uncertain significance Single submitter
- ELFN1 p.Asn210Ser Uncertain significance Single submitter
- ELFN1 p.Asn68Lys Uncertain significance Single submitter
- ELFN1 p.Asp547Asn Uncertain significance Single submitter
- ELFN1 p.Asp547Glu Uncertain significance Single submitter
- ELFN1 p.Asp747Asn Uncertain significance Single submitter
- ELFN1 p.Cys12Ser Uncertain significance Single submitter
- ELFN1 p.Gln111Arg Uncertain significance Single submitter
- ELFN1 p.Gln234Arg Uncertain significance Single submitter
- ELFN1 p.Gln326Glu Uncertain significance Single submitter
- ELFN1 p.Glu314Lys Uncertain significance Single submitter
- ELFN1 p.Glu492Lys Uncertain significance Single submitter
- ELFN1 p.Glu505Lys Uncertain significance Single submitter
- ELFN1 p.Glu540Lys Uncertain significance Single submitter
- ELFN1 p.Glu595Lys Uncertain significance Single submitter
- ELFN1 p.Glu603Lys Uncertain significance Single submitter
- ELFN1 p.Glu655Lys Uncertain significance Single submitter
- ELFN1 p.Glu671Gln Uncertain significance Single submitter
- ELFN1 p.Glu695Asp Uncertain significance Single submitter
- ELFN1 p.Glu695Lys Uncertain significance Single submitter
- ELFN1 p.Gly178Ser Uncertain significance Single submitter
- ELFN1 p.Gly238Ser Uncertain significance Single submitter
- ELFN1 p.Gly23Ser Uncertain significance Single submitter
- ELFN1 p.Gly3Arg Uncertain significance Single submitter
- ELFN1 p.Gly479Arg Uncertain significance Single submitter
- ELFN1 p.Gly531Arg Uncertain significance Single submitter
- ELFN1 p.Gly545Val Uncertain significance Single submitter
- ELFN1 p.Gly610Ser Uncertain significance Single submitter
- ELFN1 p.Gly621Ser Uncertain significance Single submitter
- ELFN1 p.Gly673Val Uncertain significance Single submitter
- ELFN1 p.His628Asn Uncertain significance Single submitter
- ELFN1 p.Ile497Met Uncertain significance Single submitter
- ELFN1 p.Leu187Phe Uncertain significance Single submitter
- ELFN1 p.Leu480Val Uncertain significance Single submitter
- ELFN1 p.Leu489Arg Uncertain significance Single submitter
- ELFN1 p.Leu541Arg Uncertain significance Single submitter
- ELFN1 p.Leu748Val Uncertain significance Single submitter
- ELFN1 p.Lys470Arg Uncertain significance Single submitter
- ELFN1 p.Lys510Arg Uncertain significance Single submitter
- ELFN1 p.Lys617Arg Uncertain significance Single submitter
- ELFN1 p.Lys668Arg Uncertain significance Single submitter
- ELFN1 p.Lys93Arg Uncertain significance Single submitter
- ELFN1 p.Met429Leu Uncertain significance Single submitter
- ELFN1 p.Phe108Ser Uncertain significance Single submitter
- ELFN1 p.Pro224Ser Uncertain significance Single submitter
- ELFN1 p.Pro276Leu Uncertain significance Single submitter
- ELFN1 p.Pro482Leu Uncertain significance Single submitter
- ELFN1 p.Pro498Arg Uncertain significance Single submitter
- ELFN1 p.Pro498Ser Uncertain significance Single submitter
- ELFN1 p.Pro518Ser Uncertain significance Single submitter
- ELFN1 p.Pro533Leu Uncertain significance Single submitter
- ELFN1 p.Pro534Leu Uncertain significance Single submitter
- ELFN1 p.Pro534Thr Uncertain significance Single submitter
- ELFN1 p.Pro635His Uncertain significance Single submitter
- ELFN1 p.Pro675Ala Uncertain significance Single submitter
- ELFN1 p.Pro675Leu Uncertain significance Single submitter
- ELFN1 p.Pro712Leu Uncertain significance Single submitter
- ELFN1 p.Pro725Ala Uncertain significance Single submitter
- ELFN1 p.Pro745Ser Uncertain significance Single submitter
- ELFN1 p.Ser189Asn Uncertain significance Single submitter
- ELFN1 p.Ser351Gly Uncertain significance Single submitter
- ELFN1 p.Ser455Leu Uncertain significance Single submitter
- ELFN1 p.Ser514Gly Uncertain significance Single submitter
- ELFN1 p.Ser588Leu Uncertain significance Single submitter
- ELFN1 p.Ser79Leu Uncertain significance Single submitter
- ELFN1 p.Thr209Ser Uncertain significance Single submitter
- ELFN1 p.Thr373Met Uncertain significance Single submitter
- ELFN1 p.Thr495Ser Uncertain significance Single submitter
- ELFN1 p.Thr581Ala Uncertain significance Single submitter
- ELFN1 p.Tyr437Cys Uncertain significance Single submitter
- ELFN1 p.Val146Ala Uncertain significance Single submitter
- ELFN1 p.Val436Ile Uncertain significance Single submitter
- ELFN1 p.Val528Asp Uncertain significance Single submitter
- ELFN1 p.Val599Leu Uncertain significance Single submitter
- ELFN1 p.Val689Ala Uncertain significance Single submitter
Predictors split 55
The independent predictors disagree with each other — read with care.
- ELFN1 p.Ala454Thr Uncertain significance Single submitter
- ELFN1 p.Ala458Thr Uncertain significance Single submitter
- ELFN1 p.Ala662Asp Uncertain significance Single submitter
- ELFN1 p.Ala694Asp Uncertain significance Single submitter
- ELFN1 p.Arg121His Uncertain significance Single submitter
- ELFN1 p.Arg264His Uncertain significance Single submitter
- ELFN1 p.Arg26Cys Conflicting Single submitter
- ELFN1 p.Arg26His Uncertain significance Single submitter
- ELFN1 p.Arg26Leu Uncertain significance Single submitter
- ELFN1 p.Arg274Cys Uncertain significance Single submitter
- ELFN1 p.Arg274His Uncertain significance Single submitter
- ELFN1 p.Arg389His Likely benign Single submitter
- ELFN1 p.Arg445Cys Uncertain significance Single submitter
- ELFN1 p.Arg445His Uncertain significance Single submitter
- ELFN1 p.Arg4Cys Likely benign Single submitter
- ELFN1 p.Arg543Trp Uncertain significance Single submitter
- ELFN1 p.Arg626Gln Uncertain significance Single submitter
- ELFN1 p.Arg698His Uncertain significance Single submitter
- ELFN1 p.Arg704Trp Uncertain significance Single submitter
- ELFN1 p.Arg71His Uncertain significance Single submitter
- ELFN1 p.Arg732Cys Uncertain significance Single submitter
- ELFN1 p.Arg73His Uncertain significance Single submitter
- ELFN1 p.Arg746Cys Uncertain significance Single submitter
- ELFN1 p.Arg779Cys Uncertain significance Single submitter
- ELFN1 p.Arg784Gly Uncertain significance Single submitter
- ELFN1 p.Arg786Trp Uncertain significance Single submitter
- ELFN1 p.Asn349Ser Uncertain significance Single submitter
- ELFN1 p.Asp253Tyr Uncertain significance Single submitter
- ELFN1 p.Glu252Lys Uncertain significance Single submitter
- ELFN1 p.Glu468Lys Uncertain significance Single submitter
- ELFN1 p.Glu671Lys Uncertain significance Single submitter
- ELFN1 p.Glu738Val Uncertain significance Single submitter
- ELFN1 p.Glu790Gln Uncertain significance Single submitter
- ELFN1 p.Gly102Ser Uncertain significance Single submitter
- ELFN1 p.Gly585Cys Uncertain significance Single submitter
- ELFN1 p.Leu601Met Uncertain significance Single submitter
- ELFN1 p.Met342Ile Uncertain significance Single submitter
- ELFN1 p.Pro272Leu Uncertain significance Single submitter
- ELFN1 p.Pro277Leu Uncertain significance Single submitter
- ELFN1 p.Pro596Leu Uncertain significance Single submitter
- ELFN1 p.Pro719Ser Uncertain significance Single submitter
- ELFN1 p.Pro722Leu Uncertain significance Single submitter
- ELFN1 p.Ser222Leu Uncertain significance Single submitter
- ELFN1 p.Ser254Leu Uncertain significance Single submitter
- ELFN1 p.Ser267Phe Uncertain significance Single submitter
- ELFN1 p.Ser275Phe Uncertain significance Single submitter
- ELFN1 p.Ser641Leu Uncertain significance Single submitter
- ELFN1 p.Ser710Cys Uncertain significance Single submitter
- ELFN1 p.Ser74Gly Uncertain significance Single submitter
- ELFN1 p.Ser775Thr Uncertain significance Single submitter
- ELFN1 p.Thr214Met Uncertain significance Single submitter
- ELFN1 p.Val13Met Uncertain significance Single submitter
- ELFN1 p.Val333Ile Uncertain significance Single submitter
- ELFN1 p.Val494Met Uncertain significance Single submitter
- ELFN1 p.Val591Met Uncertain significance Single submitter
All ELFN1 variants
Pathogenic 4
- p.Ile43fs No assertion criteria Dursun-Ozgul neurodevelopmental syndrome
- p.Pro50His No assertion criteria Dursun-Ozgul neurodevelopmental syndrome
- p.Val159del No assertion criteria Dursun-Ozgul neurodevelopmental syndrome
- p.Val591fs No assertion criteria Dursun-Ozgul neurodevelopmental syndrome
Pathogenic/Likely pathogenic 1
- p.Ala15fs No assertion criteria Dursun-Ozgul neurodevelopmental syndrome
Conflicting classifications of pathogenicity 2
- p.Ala676Val Single submitter ⚠
- p.Arg26Cys Single submitter ⚠
Benign 13
- p.Ala14= Single submitter
- p.Ala477Val Single submitter
- p.Ala796= Single submitter
- p.Arg647= Single submitter
- p.Glu258= Single submitter
- p.His20= Single submitter
- p.Ile99= Single submitter
- p.Pro412= Single submitter
- p.Pro614= Single submitter
- p.Ser105= Single submitter
- p.Ser411= Single submitter
- p.Ser823= Single submitter
- p.Val630Met Single submitter
Benign/Likely benign 1
- p.Gly228= Multiple submitters
Likely benign 18
- p.Asp618= Multiple submitters
- c.-1G>A Single submitter
- p.Ala502Val Single submitter
- p.Ala656= Single submitter
- p.Arg316His Single submitter
- p.Arg389His Single submitter ⚠
- p.Arg4Cys Single submitter ⚠
- p.Asp101= Single submitter
- p.Cys196= Single submitter
- p.Gly644Ser Single submitter
- p.Ile158= Single submitter
- p.Leu753= Single submitter
- p.Phe780Leu Single submitter
- p.Pro675= Single submitter
- p.Ser296= Single submitter
- p.Tyr471= Single submitter
- p.Tyr707= Single submitter
- p.Val657= Single submitter
Uncertain significance 162
- p.Ala177Thr Single submitter ⚠
- p.Ala207Thr Single submitter ⚠
- p.Ala25Val Single submitter ⚠
- p.Ala305Ser Single submitter ⚠
- p.Ala435Thr Single submitter ⚠
- p.Ala454Thr Single submitter ⚠
- p.Ala458Thr Single submitter ⚠
- p.Ala481Thr Single submitter ⚠
- p.Ala493Thr Single submitter ⚠
- p.Ala502Thr Single submitter ⚠
- p.Ala515Thr Single submitter ⚠
- p.Ala515Val Single submitter ⚠
- p.Ala575Thr Single submitter ⚠
- p.Ala575Val Single submitter ⚠
- p.Ala619Thr Single submitter ⚠
- p.Ala632Asp Single submitter ⚠
- p.Ala638Ser Single submitter ⚠
- p.Ala651Thr Single submitter ⚠
- p.Ala662Asp Single submitter ⚠
- p.Ala694Asp Single submitter ⚠
- p.Ala713Pro Single submitter ⚠
- p.Arg119Gln Single submitter ⚠
- p.Arg121His Single submitter ⚠
- p.Arg236His Single submitter ⚠
- p.Arg240His Single submitter ⚠
- p.Arg264His Single submitter ⚠
- p.Arg269Ser Single submitter ⚠
- p.Arg26His Single submitter ⚠
- p.Arg26Leu Single submitter ⚠
- p.Arg274Cys Single submitter ⚠
- p.Arg274His Single submitter ⚠
- p.Arg367His Single submitter ⚠
- p.Arg444Gln Single submitter ⚠
- p.Arg445Cys Single submitter ⚠
- p.Arg445His Single submitter ⚠
- p.Arg496Cys Single submitter ⚠
- p.Arg529Gln Single submitter ⚠
- p.Arg536His Single submitter ⚠
- p.Arg536Leu Single submitter ⚠
- p.Arg536Ser Single submitter ⚠
- p.Arg543Gln Single submitter ⚠
- p.Arg543Trp Single submitter ⚠
- p.Arg626Gln Single submitter ⚠
- p.Arg650Leu Single submitter ⚠
- p.Arg653Gln Single submitter ⚠
- p.Arg66Gln Single submitter ⚠
- p.Arg698His Single submitter ⚠
- p.Arg704Trp Single submitter ⚠
- p.Arg71His Single submitter ⚠
- p.Arg732Cys Single submitter ⚠
- p.Arg732His Single submitter ⚠
- p.Arg73His Single submitter ⚠
- p.Arg746Cys Single submitter ⚠
- p.Arg779Cys Single submitter ⚠
- p.Arg784Gly Single submitter ⚠
- p.Arg786Trp Single submitter ⚠
- p.Arg801Cys Single submitter ⚠
- p.Asn109Ile Single submitter ⚠
- p.Asn210Ser Single submitter ⚠
- p.Asn349Ser Single submitter ⚠
- p.Asn68Lys Single submitter ⚠
- p.Asp253Tyr Single submitter ⚠
- p.Asp547Asn Single submitter ⚠
- p.Asp547Glu Single submitter ⚠
- p.Asp747Asn Single submitter ⚠
- p.Cys12Ser Single submitter ⚠
- p.Gln111Arg Single submitter ⚠
- p.Gln234Arg Single submitter ⚠
- p.Gln271Ter Single submitter
- p.Gln326Glu Single submitter ⚠
- p.Glu252Lys Single submitter ⚠
- p.Glu314Lys Single submitter ⚠
- p.Glu468Lys Single submitter ⚠
- p.Glu492Lys Single submitter ⚠
- p.Glu505Lys Single submitter ⚠
- p.Glu540Lys Single submitter ⚠
- p.Glu595Lys Single submitter ⚠
- p.Glu603Lys Single submitter ⚠
- p.Glu655Lys Single submitter ⚠
- p.Glu671Gln Single submitter ⚠
- p.Glu671Lys Single submitter ⚠
- p.Glu695Asp Single submitter ⚠
- p.Glu695Lys Single submitter ⚠
- p.Glu738Val Single submitter ⚠
- p.Glu790Gln Single submitter ⚠
- p.Gly102Ser Single submitter ⚠
- p.Gly178Ser Single submitter ⚠
- p.Gly238Ser Single submitter ⚠
- p.Gly23Ser Single submitter ⚠
- p.Gly3Arg Single submitter ⚠
- p.Gly479Arg Single submitter ⚠
- p.Gly531Arg Single submitter ⚠
- p.Gly545Val Single submitter ⚠
- p.Gly585Cys Single submitter ⚠
- p.Gly610Ser Single submitter ⚠
- p.Gly621Ser Single submitter ⚠
- p.Gly673Val Single submitter ⚠
- p.His628Asn Single submitter ⚠
- p.Ile497Met Single submitter ⚠
- p.Leu187Phe Single submitter ⚠
- p.Leu480Val Single submitter ⚠
- p.Leu489Arg Single submitter ⚠
- p.Leu541Arg Single submitter ⚠
- p.Leu601Met Single submitter ⚠
- p.Leu748Val Single submitter ⚠
- p.Lys470Arg Single submitter ⚠
- p.Lys510Arg Single submitter ⚠
- p.Lys617Arg Single submitter ⚠
- p.Lys668Arg Single submitter ⚠
- p.Lys93Arg Single submitter ⚠
- p.Met342Ile Single submitter ⚠
- p.Met429Leu Single submitter ⚠
- p.Phe108Ser Single submitter ⚠
- p.Pro224Ser Single submitter ⚠
- p.Pro272Leu Single submitter ⚠
- p.Pro276Leu Single submitter ⚠
- p.Pro277Leu Single submitter ⚠
- p.Pro482Leu Single submitter ⚠
- p.Pro498Arg Single submitter ⚠
- p.Pro498Ser Single submitter ⚠
- p.Pro518Ser Single submitter ⚠
- p.Pro533Leu Single submitter ⚠
- p.Pro534Leu Single submitter ⚠
- p.Pro534Thr Single submitter ⚠
- p.Pro596Leu Single submitter ⚠
- p.Pro635His Single submitter ⚠
- p.Pro675Ala Single submitter ⚠
- p.Pro675Leu Single submitter ⚠
- p.Pro712Leu Single submitter ⚠
- p.Pro719Ser Single submitter ⚠
- p.Pro722Leu Single submitter ⚠
- p.Pro725Ala Single submitter ⚠
- p.Pro745Ser Single submitter ⚠
- p.Ser189Asn Single submitter ⚠
- p.Ser222Leu Single submitter ⚠
- p.Ser254Leu Single submitter ⚠
- p.Ser267Phe Single submitter ⚠
- p.Ser275Phe Single submitter ⚠
- p.Ser351Gly Single submitter ⚠
- p.Ser455Leu Single submitter ⚠
- p.Ser514Gly Single submitter ⚠
- p.Ser588Leu Single submitter ⚠
- p.Ser641Leu Single submitter ⚠
- p.Ser710Cys Single submitter ⚠
- p.Ser74Gly Single submitter ⚠
- p.Ser775Thr Single submitter ⚠
- p.Ser79Leu Single submitter ⚠
- p.Thr209Ser Single submitter ⚠
- p.Thr214Met Single submitter ⚠
- p.Thr373Met Single submitter ⚠
- p.Thr495Ser Single submitter ⚠
- p.Thr581Ala Single submitter ⚠
- p.Tyr437Cys Single submitter ⚠
- p.Val13Met Single submitter ⚠
- p.Val146Ala Single submitter ⚠
- p.Val333Ile Single submitter ⚠
- p.Val436Ile Single submitter ⚠
- p.Val494Met Single submitter ⚠
- p.Val528Asp Single submitter ⚠
- p.Val591Met Single submitter ⚠
- p.Val599Leu Single submitter ⚠
- p.Val689Ala Single submitter ⚠