FANCI — 2351 ClinVar variants

All ClinVar germline FANCI variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 817 flagged for review →

85 Pathogenic · 55 Pathogenic/Likely pathogenic · 131 Likely pathogenic · 73 Conflicting · 100 Benign · 39 Benign/Likely benign · 888 Likely benign · 980 Uncertain significance

Full FANCI gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 817

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors lean, ClinVar uncertain 687

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 687

Predictors split 115

The independent predictors disagree with each other — read with care.

All FANCI variants

Pathogenic 85

Pathogenic/Likely pathogenic 55

  • c.158-2A>G Multiple submitters Fanconi anemia complementation group I
  • c.446del Multiple submitters Fanconi anemia complementation group I
  • p.Arg117Ter Multiple submitters Fanconi anemia complementation group I
  • p.Arg1285Ter Multiple submitters FANCI-related disorders
  • p.Arg1299Ter Multiple submitters Fetal anomalies with a likely genetic cause
  • p.Arg533Ter Multiple submitters Fanconi anemia
  • p.Arg602Ter Multiple submitters Fanconi anemia complementation group I
  • p.Arg614Ter Multiple submitters Fanconi anemia complementation group I
  • p.Arg712Ter Multiple submitters FANCI-related disorders
  • p.Arg879Ter Multiple submitters Fanconi anemia
  • p.Arg944fs Multiple submitters Fanconi anemia
  • p.Arg954fs Multiple submitters Fanconi anemia
  • p.Asn304fs Multiple submitters Fanconi anemia complementation group I
  • p.Asp1165fs Multiple submitters Fanconi anemia
  • p.Asp80fs Multiple submitters Fanconi anemia
  • p.Cys1014Tyr Multiple submitters Fanconi anemia complementation group I
  • p.Cys1209fs Multiple submitters Fanconi anemia complementation group I
  • p.Cys777Ter Multiple submitters Fanconi anemia
  • p.Gln171Ter Multiple submitters FANCI-related disorder
  • p.Gln297Ter Multiple submitters Fanconi anemia
  • p.Gln351Ter Multiple submitters FANCI-related disorder
  • p.Gln438fs Multiple submitters Fanconi anemia
  • p.Gln633Ter Multiple submitters Fanconi anemia
  • p.Gln823Ter Multiple submitters Fanconi anemia complementation group I
  • p.Gln913Ter Multiple submitters Fanconi anemia complementation group I
  • p.Glu1303Ter Multiple submitters Fanconi anemia complementation group I
  • p.Glu247fs Multiple submitters Fanconi anemia complementation group I
  • p.Glu837Ter Multiple submitters Fanconi anemia
  • p.Glu894Ter Multiple submitters Fanconi anemia
  • p.Glu899fs Multiple submitters Fanconi anemia
  • p.Gly296Ter Multiple submitters Fanconi anemia
  • p.Gly401fs Multiple submitters Fanconi anemia
  • p.Gly857fs Multiple submitters Fanconi anemia complementation group I
  • p.His292fs Multiple submitters Fanconi anemia
  • p.His99fs Multiple submitters Fanconi anemia complementation group I
  • p.Ile279fs Multiple submitters Fanconi anemia
  • p.Leu1049fs Multiple submitters Fanconi anemia
  • p.Leu1208fs Multiple submitters Fanconi anemia
  • p.Leu164fs Multiple submitters Fanconi anemia
  • p.Leu627fs Multiple submitters Fanconi anemia complementation group I
  • p.Leu781_Ser782insTer Multiple submitters Fanconi anemia
  • p.Leu983fs Multiple submitters Fanconi anemia
  • p.Lys1040fs Multiple submitters Fanconi anemia complementation group I
  • p.Lys1221fs Multiple submitters Fanconi anemia
  • p.Lys548fs Multiple submitters Fanconi anemia
  • p.Lys780fs Multiple submitters Fanconi anemia
  • p.Lys808Ter Multiple submitters Fanconi anemia
  • p.Ser333Ter Multiple submitters FANCI-related disorders
  • p.Thr1226fs Multiple submitters Fanconi anemia complementation group I
  • p.Tyr1039fs Multiple submitters Fanconi anemia
  • p.Tyr283Ter Multiple submitters Fanconi anemia
  • p.Tyr487Ter Multiple submitters Fanconi anemia
  • p.Tyr699Ter Multiple submitters Fanconi anemia
  • p.Tyr778fs Multiple submitters Fanconi anemia
  • p.Val986fs Multiple submitters Fanconi anemia

Likely pathogenic 131

  • c.1512+1G>A Multiple submitters Fanconi anemia
  • c.1584-1G>C Multiple submitters Fanconi anemia
  • c.1698+1G>A Multiple submitters Fanconi anemia
  • c.1891-2A>G Multiple submitters Fanconi anemia
  • c.2291+2T>A Multiple submitters Fanconi anemia
  • c.2292-1G>T Multiple submitters Fanconi anemia
  • c.2456+1G>A Multiple submitters Fanconi anemia
  • c.2457-2A>G Multiple submitters Fanconi anemia
  • c.2804-2A>G Multiple submitters Fanconi anemia
  • c.2804-2A>T Multiple submitters Fanconi anemia
  • c.3006+3A>G Multiple submitters Fanconi anemia complementation group I
  • c.3058+1G>A Multiple submitters Fanconi anemia
  • c.3187-2A>G Multiple submitters Fanconi anemia
  • c.3652-1G>T Multiple submitters Fanconi anemia
  • c.542_545+57del Multiple submitters Fanconi anemia
  • c.85-1G>T Multiple submitters Fanconi anemia complementation group I
  • p.Gln416Ter Multiple submitters Fanconi anemia complementation group I
  • p.Gln687Ter Multiple submitters Fanconi anemia complementation group I
  • p.Thr886fs Multiple submitters Fanconi anemia complementation group I
  • c.1112+2T>C Single submitter Fanconi anemia complementation group I
  • c.1113-1G>A Single submitter Fanconi anemia
  • c.1293+1G>A Single submitter Fanconi anemia
  • c.1293+1G>T Single submitter Fanconi anemia complementation group I
  • c.1293+2T>G Single submitter Fanconi anemia
  • c.1381+1G>A Single submitter Fanconi anemia complementation group I
  • c.1381+1G>T Single submitter Fanconi anemia
  • c.157+1G>A Single submitter Fanconi anemia
  • c.1583+2T>C Single submitter Fanconi anemia complementation group I
  • c.1584-1G>A Single submitter Fanconi anemia complementation group I
  • c.1699-2A>C Single submitter Fanconi anemia complementation group I
  • c.1822-2A>C Single submitter Fanconi anemia
  • c.1890+1G>T Single submitter Fanconi anemia complementation group I
  • c.2169+1G>A Single submitter Fanconi anemia
  • c.2169+2T>C Single submitter Fanconi anemia
  • c.2291+1G>A Single submitter Fanconi anemia
  • c.2637-1G>C Single submitter Fanconi anemia
  • c.2637-1G>T Single submitter Fanconi anemia complementation group I
  • c.2804-1G>A Single submitter Fanconi anemia
  • c.2804-1G>C Single submitter Fanconi anemia
  • c.2889+1G>A Single submitter Fanconi anemia complementation group I
  • c.2889+2T>C Single submitter Fanconi anemia
  • c.289-2A>G Single submitter Fanconi anemia complementation group I
  • c.2890-1G>A Single submitter
  • c.2890-2A>C Single submitter Fanconi anemia complementation group I
  • c.3006+1G>A Single submitter Fanconi anemia
  • c.3007-1G>A Single submitter Fanconi anemia
  • c.3007-1G>T Single submitter Fanconi anemia complementation group I
  • c.3058+1G>C Single submitter Fanconi anemia
  • c.3538-2A>T Single submitter Fanconi anemia
  • c.3584_3592-24del Single submitter Fanconi anemia
  • c.3591+1G>A Single submitter Fanconi anemia
  • c.3591+1G>C Single submitter Fanconi anemia
  • c.3816+2T>C Single submitter Fanconi anemia complementation group I
  • c.3924+1G>A Single submitter Fanconi anemia
  • c.3924+2T>C Single submitter Fanconi anemia complementation group I
  • c.446-2A>G Single submitter Fanconi anemia
  • c.504-2A>G Single submitter Fanconi anemia
  • c.545+1G>T Single submitter Fanconi anemia complementation group I
  • c.669+1G>T Single submitter Fanconi anemia complementation group I
  • c.84+2_84+3del Single submitter Fanconi anemia
  • c.85-1G>A Single submitter Fanconi anemia
  • c.85-2A>G Single submitter Fanconi anemia
  • c.879_882+14del Single submitter Fanconi anemia
  • c.882+2T>A Single submitter Fanconi anemia
  • c.882+2T>C Single submitter Fanconi anemia
  • p.Ala789fs Single submitter Fanconi anemia complementation group I
  • p.Asn1193fs Single submitter Fanconi anemia complementation group I
  • p.Asn352fs Single submitter Fanconi anemia complementation group I
  • p.Asn739fs Single submitter Fanconi anemia complementation group I
  • p.Asp656fs Single submitter Fanconi anemia complementation group I
  • p.Asp720_Phe721insTer Single submitter Fanconi anemia complementation group I
  • p.Asp876fs Single submitter Fanconi anemia complementation group I
  • p.Cys56fs Single submitter Fanconi anemia complementation group I
  • p.Cys584fs Single submitter Fanconi anemia complementation group I
  • p.Gln1122fs Single submitter Fanconi anemia complementation group I
  • p.Gln1182Ter Single submitter Fanconi anemia complementation group I
  • p.Gln1277Ter Single submitter Fanconi anemia complementation group I
  • p.Gln159fs Single submitter Fanconi anemia complementation group I
  • p.Gln176fs Single submitter Fanconi anemia complementation group I
  • p.Gln320Ter Single submitter FANCI-related disorders
  • p.Gln342Ter Single submitter Fanconi anemia complementation group I
  • p.Gln597Ter Single submitter Fanconi anemia complementation group I
  • p.Gln630Ter Single submitter Fanconi anemia complementation group I
  • p.Gln661Ter Single submitter Fanconi anemia complementation group I
  • p.Gln74Ter Single submitter Fanconi anemia complementation group I
  • p.Glu1067fs Single submitter Fanconi anemia complementation group I
  • p.Glu1097fs Single submitter Fanconi anemia complementation group I
  • p.Glu1118Ter Single submitter Fanconi anemia complementation group I
  • p.Glu26fs Single submitter Fanconi anemia complementation group I
  • p.Glu384fs Single submitter Fanconi anemia complementation group I
  • p.Glu636fs Single submitter Fanconi anemia complementation group I
  • p.Glu695fs Single submitter Fanconi anemia complementation group I
  • p.Glu84fs Single submitter Fanconi anemia complementation group I
  • p.Glu96fs Single submitter
  • p.Ile1293fs Single submitter Fanconi anemia complementation group A
  • p.Ile234fs Single submitter Fanconi anemia complementation group I
  • p.Ile275fs Single submitter Fanconi anemia complementation group I
  • p.Ile877fs Single submitter Fanconi anemia complementation group I
  • p.Leu1267fs Single submitter Fanconi anemia complementation group I
  • p.Leu491fs Single submitter Fanconi anemia complementation group I
  • p.Leu544Pro Single submitter
  • p.Leu645fs Single submitter Fanconi anemia complementation group I
  • p.Leu909Ter Single submitter Fanconi anemia complementation group I
  • p.Leu969fs Single submitter Fanconi anemia complementation group I
  • p.Leu984_Leu985insTer Single submitter FANCI-related disorders
  • p.Leu992Ter Single submitter Fanconi anemia complementation group I
  • p.Lys1230fs Single submitter Fanconi anemia complementation group I
  • p.Lys1269Ter Single submitter Fanconi anemia complementation group I
  • p.Lys141fs Single submitter Fanconi anemia complementation group I
  • p.Lys227fs Single submitter Fanconi anemia
  • p.Lys396Ter Single submitter Fanconi anemia complementation group I
  • p.Lys715Ter Single submitter Fanconi anemia complementation group I
  • p.Lys898fs Single submitter Fanconi anemia complementation group I
  • p.Lys900fs Single submitter Fanconi anemia complementation group I
  • p.Phe193_Lys197delinsTer Single submitter Fanconi anemia complementation group I
  • p.Phe349fs Single submitter Fanconi anemia complementation group I
  • p.Ser1027fs Single submitter Fanconi anemia complementation group I
  • p.Ser1111fs Single submitter Fanconi anemia complementation group I
  • p.Ser120fs Single submitter Fanconi anemia complementation group I
  • p.Ser1220fs Single submitter Fanconi anemia complementation group I
  • p.Ser249fs Single submitter Fanconi anemia complementation group I
  • p.Ser261Ter Single submitter Fanconi anemia complementation group I
  • p.Ser333fs Single submitter Fanconi anemia complementation group I
  • p.Ser563fs Single submitter Fanconi anemia complementation group I
  • p.Ser565fs Single submitter Fanconi anemia complementation group I
  • p.Ser732fs Single submitter Fanconi anemia complementation group I
  • p.Ser860fs Single submitter Fanconi anemia complementation group I
  • p.Tyr1039Ter Single submitter Fanconi anemia complementation group I
  • p.Tyr1215Ter Single submitter Fanconi anemia complementation group I
  • p.Val1084fs Single submitter Fanconi anemia complementation group I
  • p.Val229fs Single submitter Fanconi anemia complementation group I

Conflicting classifications of pathogenicity 73

Benign 100

Benign/Likely benign 39

Likely benign 888

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 980

Showing the top 300 by review status; the full set is in the sitemap.