FH — 2285 ClinVar variants

All ClinVar germline FH variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 976 flagged for review →

225 Pathogenic · 108 Pathogenic/Likely pathogenic · 132 Likely pathogenic · 210 Conflicting · 34 Benign · 136 Benign/Likely benign · 481 Likely benign · 959 Uncertain significance

Full FH gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 976

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 111

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 13

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 615

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 615

Predictors split 237

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 237

All FH variants

Pathogenic 225

Pathogenic/Likely pathogenic 108

  • c.1108+1G>T Multiple submitters FH-related disorder
  • c.1236+1G>A Multiple submitters hereditary neoplastic syndrome
  • c.1390+1G>T Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.1391-1_1391delinsTT Multiple submitters hereditary neoplastic syndrome
  • c.1391-1G>A Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.1391-1G>T Multiple submitters hereditary neoplastic syndrome
  • c.1391-269A>G Multiple submitters hereditary neoplastic syndrome
  • c.1391-2A>T Multiple submitters hereditary neoplastic syndrome
  • c.1391-2del Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.267+1_267+10del Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.267+1G>A Multiple submitters hereditary neoplastic syndrome
  • c.378+1G>A Multiple submitters fumaric aciduria
  • c.378+2T>C Multiple submitters hereditary neoplastic syndrome
  • c.379-1G>C Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.379-2A>G Multiple submitters hereditary neoplastic syndrome
  • c.379-2A>T Multiple submitters hereditary neoplastic syndrome
  • c.555+1G>A Multiple submitters hereditary neoplastic syndrome
  • c.556-2A>T Multiple submitters hereditary neoplastic syndrome
  • c.738+1G>C Multiple submitters hereditary neoplastic syndrome
  • c.738+1G>T Multiple submitters hereditary neoplastic syndrome
  • c.738+2T>C Multiple submitters hereditary neoplastic syndrome
  • c.738+3A>G Multiple submitters hereditary neoplastic syndrome
  • c.739-2A>G Multiple submitters hereditary neoplastic syndrome
  • c.893_904+7del Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.904+1G>A Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.905-1G>A Multiple submitters hereditary neoplastic syndrome
  • c.905-2A>C Multiple submitters fumaric aciduria
  • p.Ala117Pro Multiple submitters hereditary neoplastic syndrome
  • p.Ala316Asp Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Arg101Pro Multiple submitters hereditary neoplastic syndrome
  • p.Arg160Thr Multiple submitters hereditary neoplastic syndrome
  • p.Arg233Cys Multiple submitters FH-related disorder
  • p.Arg233Gly Multiple submitters hereditary neoplastic syndrome
  • p.Arg233Leu Multiple submitters hereditary neoplastic syndrome
  • p.Arg343Ter Multiple submitters FH-related disorder
  • p.Arg51Gln Multiple submitters hereditary neoplastic syndrome
  • p.Asn107Lys Multiple submitters hereditary neoplastic syndrome
  • p.Asn107Thr Multiple submitters hereditary neoplastic syndrome
  • p.Asn154Lys Multiple submitters
  • p.Asn188Ile Multiple submitters fumaric aciduria
  • p.Asn340Lys Multiple submitters FH-related disorder
  • p.Asn373del Multiple submitters hereditary neoplastic syndrome
  • p.Asp189Val Multiple submitters hereditary neoplastic syndrome
  • p.Asp238His Multiple submitters hereditary neoplastic syndrome
  • p.Asp341Asn Multiple submitters hereditary neoplastic syndrome
  • p.Cys434Arg Multiple submitters hereditary neoplastic syndrome
  • p.Gln108Ter Multiple submitters uterine corpus leiomyoma
  • p.Gln142Arg Multiple submitters hereditary neoplastic syndrome
  • p.Gln185Arg Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Gln185fs Multiple submitters fumaric aciduria
  • p.Gln376Ter Multiple submitters hereditary neoplastic syndrome
  • p.Gln386Arg Multiple submitters hereditary neoplastic syndrome
  • p.Gln47Ter Multiple submitters hereditary neoplastic syndrome
  • p.Gln496Ter Multiple submitters
  • p.Glu168fs Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Glu362Lys Multiple submitters hereditary neoplastic syndrome
  • p.Gly276Val Multiple submitters hereditary neoplastic syndrome
  • p.Gly280fs Multiple submitters fumaric aciduria
  • p.Gly326Glu Multiple submitters hereditary neoplastic syndrome
  • p.Gly346Asp Multiple submitters fumaric aciduria ⚠
  • p.Gly397Arg Multiple submitters hereditary neoplastic syndrome
  • p.Gly437fs Multiple submitters
  • p.Gly479Ter Multiple submitters hereditary neoplastic syndrome
  • p.Gly490fs Multiple submitters hereditary neoplastic syndrome
  • p.His135Arg Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.His180Arg Multiple submitters hereditary neoplastic syndrome
  • p.His196Arg Multiple submitters hereditary neoplastic syndrome
  • p.His235Tyr Multiple submitters hereditary neoplastic syndrome
  • p.His318Leu Multiple submitters hereditary neoplastic syndrome
  • p.His318Tyr Multiple submitters FH-related disorder
  • p.His402Arg Multiple submitters hereditary neoplastic syndrome
  • p.Ile269_Tyr270insTer Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Leu218Pro Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Leu356Ter Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Leu423Arg Multiple submitters hereditary neoplastic syndrome
  • p.Leu453Pro Multiple submitters fumaric aciduria
  • p.Leu482Ter Multiple submitters hereditary neoplastic syndrome
  • p.Leu492fs Multiple submitters hereditary neoplastic syndrome
  • p.Lys223fs Multiple submitters hereditary neoplastic syndrome
  • p.Lys230Glu Multiple submitters hereditary neoplastic syndrome
  • p.Lys263_Ile269del Multiple submitters hereditary neoplastic syndrome
  • p.Met164fs Multiple submitters fumaric aciduria
  • p.Met195Thr Multiple submitters FH-related disorder
  • p.Met195Val Multiple submitters FH-related disorder
  • p.Met382Val Multiple submitters hereditary neoplastic syndrome
  • p.Phe305fs Multiple submitters FH-related disorder
  • p.Phe305Ser Multiple submitters hereditary neoplastic syndrome
  • p.Phe312Leu Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Phe312Ser Multiple submitters hereditary neoplastic syndrome
  • p.Phe403fs Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Pro174Arg Multiple submitters FH-related disorder
  • p.Ser186Asn Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser187Leu Multiple submitters hereditary neoplastic syndrome
  • p.Ser365Asn Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser365Gly Multiple submitters hereditary neoplastic syndrome
  • p.Ser366Asn Multiple submitters hereditary neoplastic syndrome
  • p.Ser399Asn Multiple submitters hereditary neoplastic syndrome
  • p.Ser419Leu Multiple submitters hereditary neoplastic syndrome
  • p.Ser419Pro Multiple submitters hereditary neoplastic syndrome
  • p.Ser480Ter Multiple submitters hereditary neoplastic syndrome
  • p.Thr147Ala Multiple submitters hereditary neoplastic syndrome
  • p.Thr193_Ala194del Multiple submitters hereditary neoplastic syndrome
  • p.Thr234Ala Multiple submitters hereditary neoplastic syndrome
  • p.Thr234Ile Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Thr330Pro Multiple submitters hereditary neoplastic syndrome
  • p.Thr493fs Multiple submitters hereditary neoplastic syndrome
  • p.Tyr465Cys Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Tyr67Asp Multiple submitters hereditary neoplastic syndrome

Likely pathogenic 132

Conflicting classifications of pathogenicity 210

Benign 34

Benign/Likely benign 136

  • c.1236+14C>T Multiple submitters hereditary neoplastic syndrome
  • c.1237-14_1237-9dup Multiple submitters fumaric aciduria
  • c.1237-18T>A Multiple submitters
  • c.1237-50TC[23] Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.1237-50TC[24] Multiple submitters hereditary neoplastic syndrome
  • c.1237-50TC[25] Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.1237-50TC[26] Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.1237-50TC[27] Multiple submitters fumaric aciduria
  • c.1237-50TC[29] Multiple submitters hereditary neoplastic syndrome
  • c.1391-15T>C Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.267+8G>A Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.268-15del Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.379-17T>C Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.379-7dup Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.555+22dup Multiple submitters
  • c.556-12A>C Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.739-10T>C Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • c.904+47G>A Multiple submitters fumaric aciduria
  • c.905-12dup Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala102= Multiple submitters hereditary neoplastic syndrome
  • p.Ala128= Multiple submitters hereditary neoplastic syndrome
  • p.Ala20= Multiple submitters hereditary neoplastic syndrome
  • p.Ala200= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala258= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala298= Multiple submitters hereditary neoplastic syndrome
  • p.Ala32= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala327= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala384= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala4= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala426= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ala486= Multiple submitters hereditary neoplastic syndrome
  • p.Ala70= Multiple submitters hereditary neoplastic syndrome
  • p.Ala9= Multiple submitters hereditary neoplastic syndrome
  • p.Ala95= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Arg10= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Arg101= Multiple submitters hereditary neoplastic syndrome
  • p.Arg51= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Asn118= Multiple submitters hereditary neoplastic syndrome
  • p.Asn133= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Asn152= Multiple submitters hereditary neoplastic syndrome
  • p.Asn159= Multiple submitters hereditary neoplastic syndrome
  • p.Asn178= Multiple submitters hereditary neoplastic syndrome
  • p.Asn284= Multiple submitters hereditary neoplastic syndrome
  • p.Asn310= Multiple submitters hereditary neoplastic syndrome
  • p.Asn40= Multiple submitters hereditary neoplastic syndrome
  • p.Asn400= Multiple submitters fumaric aciduria
  • p.Asn433= Multiple submitters hereditary neoplastic syndrome
  • p.Asn441= Multiple submitters hereditary neoplastic syndrome
  • p.Asn446= Multiple submitters hereditary neoplastic syndrome
  • p.Asn478= Multiple submitters hereditary neoplastic syndrome
  • p.Asp125= Multiple submitters hereditary neoplastic syndrome
  • p.Asp319= Multiple submitters hereditary neoplastic syndrome
  • p.Asp498= Multiple submitters hereditary neoplastic syndrome
  • p.Gln108= Multiple submitters hereditary neoplastic syndrome
  • p.Gln253= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Gln47= Multiple submitters hereditary neoplastic syndrome
  • p.Glu362= Multiple submitters hereditary neoplastic syndrome
  • p.Glu378= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Glu404= Multiple submitters hereditary neoplastic syndrome
  • p.Glu53= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Gly167= Multiple submitters hereditary neoplastic syndrome
  • p.Gly250= Multiple submitters hereditary neoplastic syndrome
  • p.Gly288= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Gly352= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Gly364= Multiple submitters hereditary neoplastic syndrome
  • p.Gly370= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Gly389= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Gly401= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.His180= Multiple submitters hereditary neoplastic syndrome
  • p.His391= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.His418= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.His462= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.His476= Multiple submitters hereditary neoplastic syndrome
  • p.Ile357= Multiple submitters hereditary neoplastic syndrome
  • p.Ile438= Multiple submitters hereditary neoplastic syndrome
  • p.Leu112= Multiple submitters hereditary neoplastic syndrome
  • p.Leu14= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Leu207= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Leu211= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Leu28= Multiple submitters hereditary neoplastic syndrome
  • p.Leu417= Multiple submitters hereditary neoplastic syndrome
  • p.Leu448= Multiple submitters hereditary neoplastic syndrome
  • p.Leu453= Multiple submitters hereditary neoplastic syndrome
  • p.Leu455= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Leu60= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Lys100= Multiple submitters hereditary neoplastic syndrome
  • p.Lys115= Multiple submitters hereditary neoplastic syndrome
  • p.Lys122= Multiple submitters hereditary neoplastic syndrome
  • p.Lys213= Multiple submitters hereditary neoplastic syndrome
  • p.Lys223= Multiple submitters hereditary neoplastic syndrome
  • p.Lys256= Multiple submitters hereditary neoplastic syndrome
  • p.Lys409= Multiple submitters hereditary neoplastic syndrome
  • p.Lys447= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Lys467= Multiple submitters hereditary neoplastic syndrome
  • p.Lys470= Multiple submitters hereditary neoplastic syndrome
  • p.Lys61= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Phe225= Multiple submitters hereditary neoplastic syndrome
  • p.Phe248= Multiple submitters hereditary neoplastic syndrome
  • p.Phe50= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Phe96= Multiple submitters hereditary neoplastic syndrome
  • p.Pro18Leu Multiple submitters hereditary neoplastic syndrome
  • p.Pro192= Multiple submitters hereditary neoplastic syndrome
  • p.Pro26= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Pro26Leu Multiple submitters hereditary neoplastic syndrome
  • p.Pro34= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Pro359= Multiple submitters hereditary neoplastic syndrome
  • p.Pro461= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser11= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser145= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser184= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser186= Multiple submitters hereditary neoplastic syndrome
  • p.Ser334= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser347= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Ser35= Multiple submitters hereditary neoplastic syndrome
  • p.Thr143= Multiple submitters hereditary neoplastic syndrome
  • p.Thr236= Multiple submitters hereditary neoplastic syndrome
  • p.Thr277= Multiple submitters hereditary neoplastic syndrome
  • p.Thr307= Multiple submitters hereditary neoplastic syndrome
  • p.Thr331= Multiple submitters hereditary neoplastic syndrome
  • p.Thr431= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Thr442= Multiple submitters hereditary neoplastic syndrome
  • p.Thr56= Multiple submitters hereditary neoplastic syndrome
  • p.Thr76= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr110= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr2= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr257= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr270= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr68= Multiple submitters hereditary neoplastic syndrome
  • p.Val153= Multiple submitters hereditary neoplastic syndrome
  • p.Val156= Multiple submitters hereditary neoplastic syndrome
  • p.Val255= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Val387= Multiple submitters hereditary neoplastic syndrome
  • p.Val396= Multiple submitters hereditary leiomyomatosis and renal cell cancer
  • p.Val435= Multiple submitters hereditary neoplastic syndrome
  • p.Val436= Multiple submitters hereditary neoplastic syndrome
  • p.Val501= Multiple submitters hereditary neoplastic syndrome

Likely benign 481

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 959

Showing the top 300 by review status; the full set is in the sitemap.