KRT12 — 96 ClinVar variants
All ClinVar germline KRT12 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 59 flagged for review →
8 Pathogenic · 1 Pathogenic/Likely pathogenic · 1 Likely pathogenic · 5 Conflicting · 9 Benign · 1 Benign/Likely benign · 12 Likely benign · 59 Uncertain significance
Full KRT12 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 59
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
KRT12 p.Asp175Asn
Conflicting
Single submitter
corneal dystrophy, Meesmann, 1
-
KRT12 p.Leu394Pro
Conflicting
Single submitter
corneal dystrophy, Meesmann, 1
Predictors lean, ClinVar uncertain 31
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
KRT12 p.Asp213Tyr
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
KRT12 p.Gln486Glu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
KRT12 p.Ala171Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ala35Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ala437Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Arg13Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Arg31Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Asn409Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Asn479Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Glu159Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Glu306Lys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Glu322Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Glu481Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Gly277Asp
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT12 p.Gly439Asp Uncertain significance Single submitter
-
KRT12 p.Gly43Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Gly71Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ile308Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Leu21Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Leu256Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Leu384Pro
Uncertain significance
Single submitter
corneal dystrophy, Meesmann, 1
-
KRT12 p.Leu89Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Lys419Glu
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT12 p.Met477Thr Uncertain significance Single submitter
-
KRT12 p.Ser114Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ser34Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ser368Phe
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ser37Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ser485Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Thr243Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Val401Leu
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 26
The independent predictors disagree with each other — read with care.
- KRT12 p.Arg20Trp Benign Multiple submitters
- KRT12 p.Gln475Arg Likely benign Multiple submitters
-
KRT12 p.Ile195Phe
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
KRT12 p.Val228Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
KRT12 p.Ala149Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ala207Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Arg144Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Arg158Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Arg187Gly
Uncertain significance
Single submitter
corneal dystrophy, Meesmann, 1
-
KRT12 p.Arg275Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Arg350Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT12 p.Arg421Gly Uncertain significance Single submitter
-
KRT12 p.Arg431Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Arg468Gln
Conflicting
Single submitter
Inborn genetic diseases
-
KRT12 p.Asn206Ser
Conflicting
Single submitter
Inborn genetic diseases
- KRT12 p.Asp248Asn Uncertain significance Single submitter
-
KRT12 p.Gln339Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- KRT12 p.Glu250Gln Benign Single submitter
- KRT12 p.Glu336Lys Uncertain significance Single submitter
-
KRT12 p.Gly325Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Leu222Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Leu239Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ser372Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Ser45Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
KRT12 p.Thr128Ala
Conflicting
Single submitter
Inborn genetic diseases
-
KRT12 p.Val238Met
Uncertain significance
Single submitter
Inborn genetic diseases
All KRT12 variants
Pathogenic 8
- p.Met129Thr Single submitter corneal dystrophy, Meesmann, 1
- p.Arg135Gly No assertion criteria corneal dystrophy, Meesmann, 1
- p.Arg135Ile No assertion criteria corneal dystrophy, Meesmann, 1
- p.Arg135Thr No assertion criteria corneal dystrophy, Meesmann, 1
- p.Leu132Pro No assertion criteria corneal dystrophy, Meesmann, 1
- p.Leu140Arg No assertion criteria corneal dystrophy, Meesmann, 1
- p.Tyr429Asp No assertion criteria corneal dystrophy, Meesmann, 1
- p.Val143Leu No assertion criteria corneal dystrophy, Meesmann, 1
Pathogenic/Likely pathogenic 1
- p.Met129Val Multiple submitters Inborn genetic diseases
Likely pathogenic 1
- p.Asn133Lys Single submitter
Conflicting classifications of pathogenicity 5
- p.Arg468Gln Single submitter Inborn genetic diseases ⚠
- p.Asn206Ser Single submitter Inborn genetic diseases ⚠
- p.Asp175Asn Single submitter corneal dystrophy, Meesmann, 1 ⚠
- p.Leu394Pro Single submitter corneal dystrophy, Meesmann, 1 ⚠
- p.Thr128Ala Single submitter Inborn genetic diseases ⚠
Benign 9
- p.Arg20Trp Multiple submitters ⚠
- p.Leu222= Multiple submitters
- p.Pro15Ser Multiple submitters corneal dystrophy, Meesmann, 1
- p.Glu250Gln Single submitter ⚠
- p.Gly227= Single submitter
- p.Leu146Pro Single submitter
- p.Thr247= Single submitter
- p.Val410Gly Single submitter
- p.Gly54Arg No assertion criteria KRT12-related disorder
Benign/Likely benign 1
- c.808-17T>A Multiple submitters
Likely benign 12
- p.Gln475Arg Multiple submitters ⚠
- p.Met301Thr Multiple submitters
- p.Thr243Ile Multiple submitters
- p.Tyr139= Multiple submitters
- c.1387+8G>C Single submitter
- c.650+7C>G Single submitter
- p.Arg144= Single submitter
- p.Arg164= Single submitter
- p.Arg19Gln Single submitter Inborn genetic diseases
- p.Arg20= Single submitter
- p.Glu147Gly Single submitter
- p.Leu422= Single submitter
Uncertain significance 59
- p.Asp213Tyr Multiple submitters Inborn genetic diseases ⚠
- p.Gln486Glu Multiple submitters Inborn genetic diseases ⚠
- p.Ile195Phe Multiple submitters Inborn genetic diseases ⚠
- p.Val228Ile Multiple submitters Inborn genetic diseases ⚠
- p.Ala149Val Single submitter Inborn genetic diseases ⚠
- p.Ala171Thr Single submitter Inborn genetic diseases ⚠
- p.Ala207Val Single submitter Inborn genetic diseases ⚠
- p.Ala35Pro Single submitter Inborn genetic diseases ⚠
- p.Ala437Thr Single submitter Inborn genetic diseases ⚠
- p.Arg13Ser Single submitter Inborn genetic diseases ⚠
- p.Arg144Gln Single submitter Inborn genetic diseases ⚠
- p.Arg158Gln Single submitter Inborn genetic diseases ⚠
- p.Arg187Gly Single submitter corneal dystrophy, Meesmann, 1 ⚠
- p.Arg275Trp Single submitter Inborn genetic diseases ⚠
- p.Arg31Lys Single submitter Inborn genetic diseases ⚠
- p.Arg350Cys Single submitter Inborn genetic diseases ⚠
- p.Arg421Gly Single submitter ⚠
- p.Arg431Cys Single submitter Inborn genetic diseases ⚠
- p.Asn409Lys Single submitter Inborn genetic diseases ⚠
- p.Asn479Ser Single submitter Inborn genetic diseases ⚠
- p.Asp248Asn Single submitter ⚠
- p.Gln339Leu Single submitter Inborn genetic diseases ⚠
- p.Gln383_Val387delinsLeu Single submitter corneal dystrophy, Meesmann, 1
- p.Gln413Ter Single submitter
- p.Glu159Lys Single submitter Inborn genetic diseases ⚠
- p.Glu306Lys Single submitter Inborn genetic diseases ⚠
- p.Glu322Gly Single submitter Inborn genetic diseases ⚠
- p.Glu330Ter Single submitter corneal dystrophy, Meesmann, 1
- p.Glu336Lys Single submitter ⚠
- p.Glu481Val Single submitter Inborn genetic diseases ⚠
- p.Gly277Asp Single submitter Inborn genetic diseases ⚠
- p.Gly291Val Single submitter Inborn genetic diseases
- p.Gly325Arg Single submitter Inborn genetic diseases ⚠
- p.Gly439Asp Single submitter ⚠
- p.Gly43Arg Single submitter Inborn genetic diseases ⚠
- p.Gly56fs Single submitter
- p.Gly71Cys Single submitter Inborn genetic diseases ⚠
- p.Ile308Met Single submitter Inborn genetic diseases ⚠
- p.Leu21Phe Single submitter Inborn genetic diseases ⚠
- p.Leu222Arg Single submitter Inborn genetic diseases ⚠
- p.Leu239Val Single submitter Inborn genetic diseases ⚠
- p.Leu256Pro Single submitter Inborn genetic diseases ⚠
- p.Leu384Pro Single submitter corneal dystrophy, Meesmann, 1 ⚠
- p.Leu89Arg Single submitter Inborn genetic diseases ⚠
- p.Lys419Glu Single submitter Inborn genetic diseases ⚠
- p.Met477Thr Single submitter ⚠
- p.Pro290Leu Single submitter Inborn genetic diseases
- p.Ser114Leu Single submitter Inborn genetic diseases ⚠
- p.Ser332fs Single submitter
- p.Ser34Pro Single submitter Inborn genetic diseases ⚠
- p.Ser368Phe Single submitter Inborn genetic diseases ⚠
- p.Ser372Tyr Single submitter Inborn genetic diseases ⚠
- p.Ser37Arg Single submitter Inborn genetic diseases ⚠
- p.Ser45Cys Single submitter Inborn genetic diseases ⚠
- p.Ser485Thr Single submitter Inborn genetic diseases ⚠
- p.Thr243Pro Single submitter Inborn genetic diseases ⚠
- p.Tyr180Ter Single submitter
- p.Val238Met Single submitter Inborn genetic diseases ⚠
- p.Val401Leu Single submitter Inborn genetic diseases ⚠