KRT5 — 344 ClinVar variants

All ClinVar germline KRT5 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 128 flagged for review →

54 Pathogenic · 10 Pathogenic/Likely pathogenic · 32 Likely pathogenic · 18 Conflicting · 29 Benign · 9 Benign/Likely benign · 46 Likely benign · 146 Uncertain significance

Full KRT5 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 128

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 7

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 2

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 75

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 43

The independent predictors disagree with each other — read with care.

All KRT5 variants

Pathogenic 54

  • c.555+1G>A Multiple submitters KRT5-related disorder
  • p.Arg165Ser Multiple submitters
  • p.Glu168Lys Multiple submitters
  • p.Glu170Lys Multiple submitters epidermolysis bullosa simplex
  • p.Glu477Lys Multiple submitters KRT5-related disorder
  • p.Gly550fs Multiple submitters epidermolysis bullosa simplex
  • p.Ile161Ser Multiple submitters epidermolysis bullosa simplex 1C, localized
  • p.Leu463Pro Multiple submitters epidermolysis bullosa simplex
  • p.Met327Thr Multiple submitters Dowling-Degos disease 1
  • p.Pro25Leu Multiple submitters Inborn genetic diseases
  • p.Ser181Pro Multiple submitters KRT5-related disorder
  • p.Val186Met Multiple submitters epidermolysis bullosa simplex
  • p.Val323Ala Multiple submitters KRT5-related disorder
  • c.1440-1G>A Single submitter
  • c.556-16C>G Single submitter epidermolysis bullosa simplex
  • c.771delG Single submitter epidermolysis bullosa simplex
  • c.927+1G>T Single submitter
  • p.Ala180Asp Single submitter
  • p.Ala180Pro Single submitter
  • p.Arg480Ter Single submitter
  • p.Asn176Asp Single submitter
  • p.Asn176Lys Single submitter
  • p.Asn193Lys Single submitter epidermolysis bullosa simplex
  • p.Asp158Tyr Single submitter
  • p.Asp328Val Single submitter epidermolysis bullosa simplex
  • p.Gln4Ter Single submitter
  • p.Glu168Gly Single submitter
  • p.Glu455Ter Single submitter
  • p.Ile140fs Single submitter Dowling-Degos disease 1
  • p.Ile161Asn Single submitter
  • p.Ile183Met Single submitter
  • p.Ile467Phe Single submitter
  • p.Leu150Pro Single submitter KRT5-related disorder
  • p.Lys173Asn Single submitter epidermolysis bullosa simplex 2B, generalized intermediate
  • p.Lys199Met Single submitter epidermolysis bullosa
  • p.Met1Val Single submitter
  • p.Phe182Ser Single submitter
  • p.Thr321Pro Single submitter epidermolysis bullosa simplex
  • p.Tyr470His Single submitter
  • p.Tyr470Ter Single submitter
  • p.Val186Glu Single submitter epidermolysis bullosa simplex
  • p.Val186Leu Single submitter epidermolysis bullosa simplex
  • p.Asn329Lys No assertion criteria epidermolysis bullosa simplex 2C, localized
  • p.Asp158Asn No assertion criteria EPIDERMOLYSIS BULLOSA SIMPLEX 2D, GENERALIZED INTERMEDIATE, AUTOSOMAL RECESSIVE
  • p.Glu475Gly No assertion criteria epidermolysis bullosa simplex 2A, generalized severe
  • p.Glu477Ter No assertion criteria epidermolysis bullosa simplex 2A, generalized severe
  • p.Leu175Phe No assertion criteria epidermolysis bullosa simplex 2A, generalized severe
  • p.Leu546fs No assertion criteria epidermolysis bullosa simplex 2C, localized
  • p.Lys441_Gln444del No assertion criteria epidermolysis bullosa simplex 2E, with migratory circinate erythema
  • p.Lys472Ter No assertion criteria epidermolysis bullosa simplex 2B, generalized intermediate
  • p.Ser547fs No assertion criteria epidermolysis bullosa simplex 2E, with migratory circinate erythema
  • p.Ser551fs No assertion criteria epidermolysis bullosa simplex 2E, with migratory circinate erythema
  • p.Ser5Ter No assertion criteria Dowling-Degos disease 1
  • p.Val7Ala No assertion criteria epidermolysis bullosa simplex 2B, generalized intermediate ⚠

Pathogenic/Likely pathogenic 10

  • p.Ala428Thr Multiple submitters KRT5-related disorder
  • p.Ala428Val Multiple submitters epidermolysis bullosa simplex
  • p.Arg331Cys Multiple submitters epidermolysis bullosa simplex 2A, generalized severe
  • p.Arg331His Multiple submitters KRT5-related disorder
  • p.Asn176Ser Multiple submitters epidermolysis bullosa simplex 2F, with mottled pigmentation
  • p.Asn177Ser Multiple submitters KRT5-related disorder
  • p.Glu466Gln Multiple submitters epidermolysis bullosa simplex
  • p.Gly476Asp Multiple submitters KRT5-related disorder
  • p.Leu196Pro Multiple submitters epidermolysis bullosa simplex
  • p.Lys199Asn Multiple submitters Dowling-Degos disease 1

Likely pathogenic 32

Conflicting classifications of pathogenicity 18

Benign 29

  • c.1218+40T>C Multiple submitters
  • c.1219-46C>A Multiple submitters
  • c.1219-71T>C Multiple submitters
  • c.1474+163A>G Multiple submitters
  • c.1475-37A>T Multiple submitters
  • c.1475-6C>T Multiple submitters epidermolysis bullosa simplex
  • c.555+9C>T Multiple submitters epidermolysis bullosa simplex
  • c.-73T>C Multiple submitters epidermolysis bullosa simplex
  • c.*185G>A Multiple submitters epidermolysis bullosa simplex
  • c.*253C>T Multiple submitters epidermolysis bullosa simplex
  • p.Ala398= Multiple submitters epidermolysis bullosa simplex
  • p.Ala52= Multiple submitters epidermolysis bullosa simplex
  • p.Arg48= Multiple submitters epidermolysis bullosa simplex
  • p.Gly138Glu Multiple submitters epidermolysis bullosa simplex
  • p.Gly518= Multiple submitters epidermolysis bullosa simplex
  • p.Gly543Ser Multiple submitters epidermolysis bullosa simplex
  • p.Gly569Arg Multiple submitters epidermolysis bullosa simplex
  • p.Leu117= Multiple submitters epidermolysis bullosa simplex
  • p.Phe87Val Multiple submitters epidermolysis bullosa simplex
  • p.Ser528Gly Multiple submitters epidermolysis bullosa simplex
  • p.Thr19= Multiple submitters epidermolysis bullosa simplex
  • p.Thr198= Multiple submitters epidermolysis bullosa simplex
  • p.Thr210= Multiple submitters epidermolysis bullosa simplex
  • p.Thr355= Multiple submitters epidermolysis bullosa simplex
  • c.*263T>C Single submitter epidermolysis bullosa simplex
  • c.*323T>C Single submitter epidermolysis bullosa simplex
  • p.Ile157= Single submitter
  • p.Leu461= Single submitter
  • p.Val540= Single submitter

Benign/Likely benign 9

  • p.Ala357= Multiple submitters epidermolysis bullosa simplex
  • p.Arg10= Multiple submitters epidermolysis bullosa simplex
  • p.Arg37Gln Multiple submitters Dowling-Degos disease 1 ⚠
  • p.Asn412= Multiple submitters epidermolysis bullosa simplex
  • p.Gly13= Multiple submitters epidermolysis bullosa simplex
  • p.Gly94Ser Multiple submitters ⚠
  • p.Leu512= Multiple submitters
  • p.Leu546Ile Multiple submitters epidermolysis bullosa simplex 1C, localized
  • p.Phe127= Multiple submitters epidermolysis bullosa simplex

Likely benign 46

Uncertain significance 146