MTMR2 — 650 ClinVar variants

All ClinVar germline MTMR2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 206 flagged for review →

33 Pathogenic · 5 Pathogenic/Likely pathogenic · 26 Likely pathogenic · 20 Conflicting · 48 Benign · 11 Benign/Likely benign · 228 Likely benign · 279 Uncertain significance

Full MTMR2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 206

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 6

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 160

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 160

Predictors split 40

The independent predictors disagree with each other — read with care.

All MTMR2 variants

Pathogenic 33

  • p.Arg162Ter Multiple submitters Charcot-Marie-Tooth disease type 4B1
  • p.Arg364Ter Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Gln590Ter Multiple submitters Charcot-Marie-Tooth disease type 4B1
  • p.Glu531Ter Multiple submitters Inborn genetic diseases
  • p.Ser514fs Multiple submitters Charcot-Marie-Tooth disease type 4B1
  • p.Val154_Cys155insTer Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.1479+1G>A Single submitter Charcot-Marie-Tooth disease type 4B1
  • c.1593+1G>A Single submitter Charcot-Marie-Tooth disease type 4B1
  • c.357+2T>C Single submitter
  • p.Ala194fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg144Ter Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg295Ter Single submitter Charcot-Marie-Tooth disease type 4B1
  • p.Arg440Ter Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg492Ter Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asn310fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asn345fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asp485fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gln13Ter Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gln278Ter Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gln312Ter Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gln426Ter Single submitter Charcot-Marie-Tooth disease type 4
  • p.Glu152fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Glu276Ter Single submitter Charcot-Marie-Tooth disease type 4B1
  • p.Lys367fs Single submitter Charcot-Marie-Tooth disease type 4B1
  • p.Phe317fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Phe498fs Single submitter Charcot-Marie-Tooth disease type 4B1
  • p.Ser292fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Tyr565fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val414fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val487fs Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gln482Ter No assertion criteria Charcot-Marie-Tooth disease type 4B1
  • p.Trp388Ter No assertion criteria Charcot-Marie-Tooth disease type 4B1
  • p.Tyr579fs No assertion criteria Charcot-Marie-Tooth disease type 4B1

Pathogenic/Likely pathogenic 5

  • p.Ala629fs Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Arg102Ter Multiple submitters Charcot-Marie-Tooth disease type 4B1
  • p.Glu574Ter Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Lys256fs Multiple submitters Charcot-Marie-Tooth disease type 4B1
  • p.Ser455fs Multiple submitters Charcot-Marie-Tooth disease type 4

Likely pathogenic 26

Conflicting classifications of pathogenicity 20

Benign 48

Benign/Likely benign 11

  • c.1770+7_1770+12del Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.570+11T>C Multiple submitters Charcot-Marie-Tooth disease
  • c.80+13C>T Multiple submitters Charcot-Marie-Tooth disease
  • c.*85A>C Multiple submitters Charcot-Marie-Tooth disease type 4B1
  • p.Ala100Thr Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Ala602Gly Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Arg62del Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Asn545Ser Multiple submitters Charcot-Marie-Tooth disease type 4 ⚠
  • p.Pro80= Multiple submitters Inborn genetic diseases
  • p.Thr496= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Val44Ile Multiple submitters Inborn genetic diseases

Likely benign 228

  • c.1480-20T>C Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.1594-20C>A Multiple submitters Charcot-Marie-Tooth disease type 4B1
  • c.1770+18T>C Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.186+9A>G Multiple submitters Charcot-Marie-Tooth disease
  • c.187-59G>C Multiple submitters
  • c.263-9C>A Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.358-60G>C Multiple submitters
  • c.654+77C>T Multiple submitters
  • c.655-13A>C Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.655-19T>C Multiple submitters Charcot-Marie-Tooth disease
  • c.80+7A>G Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.81-4G>C Multiple submitters Inborn genetic diseases
  • c.994-21A>G Multiple submitters
  • p.Ala71= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Arg18= Multiple submitters Inborn genetic diseases
  • p.Arg586Gln Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Asp320= Multiple submitters Inborn genetic diseases
  • p.Gln482= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Gly99= Multiple submitters Charcot-Marie-Tooth disease
  • p.Leu208= Multiple submitters Inborn genetic diseases
  • p.Leu25= Multiple submitters Inborn genetic diseases
  • p.Leu433= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Leu435= Multiple submitters Inborn genetic diseases
  • p.Ser148= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Ser174= Multiple submitters Inborn genetic diseases
  • p.Ser558= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Tyr149= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Tyr565= Multiple submitters Charcot-Marie-Tooth disease type 4
  • p.Tyr93= Multiple submitters Charcot-Marie-Tooth disease type 4
  • c.1179+16T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.1179+7G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1180-11C>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.1180-11C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.1180-17A>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.1180-20T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.1180-4C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.1180-9G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1386+13C>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1386+13C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.1386+14C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.1386+151dup Single submitter
  • c.1386+17G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1387-13_1387-12del Single submitter Charcot-Marie-Tooth disease type 4
  • c.1387-19T>G Single submitter Charcot-Marie-Tooth disease
  • c.1387-7G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1387-8T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.1479+12G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1479+13G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1479+17A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.1479+19_1479+23del Single submitter Charcot-Marie-Tooth disease type 4
  • c.1480-18G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1480-220G>A Single submitter
  • c.1480-4G>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.1593+9T>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.1594-17A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.1594-4A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.1770+12A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.1770+15A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.1770+15del Single submitter Charcot-Marie-Tooth disease type 4
  • c.1770+20C>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.1770+20del Single submitter Charcot-Marie-Tooth disease type 4
  • c.1770+7G>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.1770+9_1770+20del Single submitter Charcot-Marie-Tooth disease type 4
  • c.1771-17_1771-16del Single submitter Charcot-Marie-Tooth disease type 4
  • c.186+16T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.186+5591A>G Single submitter
  • c.186+5624TTTTA[5] Single submitter
  • c.186+733del Single submitter
  • c.187-16G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.187-16G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.187-5C>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.187-6C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.262+11G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.262+11G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.262+198del Single submitter
  • c.263-14T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.263-20_263-19del Single submitter Charcot-Marie-Tooth disease type 4
  • c.357+10A>G Single submitter
  • c.357+16G>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.358-10C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.358-14_358-12del Single submitter Charcot-Marie-Tooth disease type 4
  • c.358-15T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.358-39_358-16del Single submitter Charcot-Marie-Tooth disease
  • c.358-42_358-18del Single submitter Charcot-Marie-Tooth disease
  • c.358-8T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.358-9C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.468+12_468+16del Single submitter Charcot-Marie-Tooth disease type 4
  • c.468+17G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.468+7G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.469-147C>T Single submitter
  • c.469-18T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.469-20G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.469-9C>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.571-12_571-11del Single submitter Charcot-Marie-Tooth disease type 4
  • c.571-19A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.571-8_571-7insG Single submitter Charcot-Marie-Tooth disease type 4
  • c.654+11T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.654+12C>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.654+13T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.654+20del Single submitter Charcot-Marie-Tooth disease type 4
  • c.654+5G>A Single submitter Charcot-Marie-Tooth disease
  • c.655-3_655-2insTTGAATACAAAGAAGTATTCCCTGAAAATGGGTGGAAGCTATATGACCCTCTTTTAGAGTATAGAAGGC Single submitter
  • c.655-4G>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.655-4G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.655-7C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.655-8A>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.80+14_80+43del Single submitter Charcot-Marie-Tooth disease type 4
  • c.80+14C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.80+17G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.80+19G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.80+8G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.80+9G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.804+11A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.804+16G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.804+301T>G Single submitter
  • c.804+7A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.804+8G>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-137T>C Single submitter
  • c.805-13T>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-140dup Single submitter
  • c.805-15T>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-16T>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-19C>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-4T>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-6A>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-6A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-7C>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.805-9C>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.81-11G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.81-12T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.81-13T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.81-16C>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.81-17A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.81-7T>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.993+17G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.993+20A>G Single submitter Charcot-Marie-Tooth disease type 4
  • c.993+20A>T Single submitter Charcot-Marie-Tooth disease type 4
  • c.994-10T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.994-15T>C Single submitter Charcot-Marie-Tooth disease type 4
  • c.994-19G>A Single submitter Charcot-Marie-Tooth disease type 4
  • c.-16C>T Single submitter Charcot-Marie-Tooth disease
  • c.-35G>C Single submitter
  • c.*1089C>G Single submitter Charcot-Marie-Tooth disease type 4B1
  • c.*163G>A Single submitter
  • c.*1684A>C Single submitter Charcot-Marie-Tooth disease type 4B1
  • c.*2187A>G Single submitter Charcot-Marie-Tooth disease type 4B1
  • c.*837G>A Single submitter Charcot-Marie-Tooth disease type 4B1
  • p.Ala127= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ala15= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ala16= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ala164= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ala327= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg217= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg443= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg459= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg463= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg604= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Arg628= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asn178= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asn189= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asn470= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asn620= Single submitter
  • p.Asp210= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Asp475= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Cys486= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gln278= Single submitter
  • p.Gln547= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Glu34= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Glu375= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Glu390= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Glu407= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gly11= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gly150= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gly169= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gly335= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gly457= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gly465= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Gly578= Single submitter Charcot-Marie-Tooth disease type 4
  • p.His357= Single submitter Charcot-Marie-Tooth disease type 4
  • p.His38= Single submitter Charcot-Marie-Tooth disease type 4
  • p.His416= Single submitter Charcot-Marie-Tooth disease type 4
  • p.His466= Single submitter
  • p.Ile132= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ile138= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ile281= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu10= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu161= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu270= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu303= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu427= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu512= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu533= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Leu540= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Lys333= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Lys451= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Pro14= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Pro20= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Pro275= Single submitter
  • p.Pro478= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Pro585= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Pro59= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Pro592= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Pro632= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ser24= Single submitter
  • p.Ser309= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ser381= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ser412= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ser47= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ser477= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ser569= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Ser6= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Thr228= Single submitter Charcot-Marie-Tooth disease
  • p.Thr280= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Thr641= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Tyr110= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Tyr113= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Tyr182= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Tyr215= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Tyr343= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Tyr543= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val131= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val200= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val328= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val406= Single submitter
  • p.Val413= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val487= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val639= Single submitter Charcot-Marie-Tooth disease type 4
  • p.Val643= Single submitter

Uncertain significance 279