PISD — 206 ClinVar variants
All ClinVar germline PISD variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 95 flagged for review →
4 Pathogenic · 2 Pathogenic/Likely pathogenic · 2 Likely pathogenic · 5 Conflicting · 4 Benign · 9 Benign/Likely benign · 81 Likely benign · 99 Uncertain significance
Full PISD gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 95
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 4
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
PISD p.Arg277Gln
Conflicting
Single submitter
Liberfarb syndrome
-
PISD p.Arg335Gln
Conflicting
Single submitter
Inborn genetic diseases
-
PISD p.Arg366His
Conflicting
Single submitter
Inborn genetic diseases
-
PISD p.Val363Ile
Conflicting
Single submitter
Inborn genetic diseases
Predictors lean, ClinVar uncertain 69
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
PISD p.Ala234Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Ala386Val
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg125His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg136His
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PISD p.Arg163His Uncertain significance Multiple submitters
-
PISD p.Arg170Gln
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg222Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg222Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg330His
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Asn196Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Asp271Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Glu226Asp
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Phe168Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Ser190Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Ser217Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Ser235Leu
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Val180Ile
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Ala122Val
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Ala17Thr Uncertain significance Single submitter
- PISD p.Ala234Thr Uncertain significance Single submitter
- PISD p.Arg137Lys Uncertain significance Single submitter
- PISD p.Arg171His Uncertain significance Single submitter
- PISD p.Arg178Gln Uncertain significance Single submitter
-
PISD p.Arg178Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Arg277Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Arg293His Uncertain significance Single submitter
- PISD p.Arg39Gly Uncertain significance Single submitter
-
PISD p.Arg401His
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Arg47His Uncertain significance Single submitter
- PISD p.Arg81Trp Uncertain significance Single submitter
- PISD p.Asn164Ser Uncertain significance Single submitter
-
PISD p.Asn202Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Asn325Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Cys265Tyr Uncertain significance Single submitter
- PISD p.Gln207Pro Uncertain significance Single submitter
- PISD p.Gln398Glu Uncertain significance Single submitter
-
PISD p.Glu216Gly
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Glu226Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Glu385Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Glu88Asp Uncertain significance Single submitter
- PISD p.Glu97Ala Uncertain significance Single submitter
- PISD p.Glu97Asp Uncertain significance Single submitter
- PISD p.Gly368Asp Uncertain significance Single submitter
-
PISD p.His133Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.His264Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.His344Asn
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Leu409Phe Uncertain significance Single submitter
- PISD p.Leu64Gln Uncertain significance Single submitter
- PISD p.Lys312Glu Uncertain significance Single submitter
- PISD p.Met291Ile Uncertain significance Single submitter
- PISD p.Phe315Cys Uncertain significance Single submitter
-
PISD p.Pro132Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Pro232Leu Uncertain significance Single submitter
-
PISD p.Pro364Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Pro66Ala Uncertain significance Single submitter
-
PISD p.Ser185Gly
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Ser328Phe Uncertain significance Single submitter
-
PISD p.Ser348Phe
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Ser408Leu Uncertain significance Single submitter
-
PISD p.Thr116Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Thr146Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Thr273Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Thr356Arg Uncertain significance Single submitter
-
PISD p.Thr356Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Thr358Ser Uncertain significance Single submitter
- PISD p.Val139Ile Uncertain significance Single submitter
- PISD p.Val186Met Uncertain significance Single submitter
-
PISD p.Val326Leu
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Val381Met Uncertain significance Single submitter
Predictors split 22
The independent predictors disagree with each other — read with care.
-
PISD p.Arg125Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg163Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg366Pro
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Arg401Cys
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Asn127Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
PISD p.Gly397Arg
Uncertain significance
Multiple submitters
Inborn genetic diseases
- PISD p.His161Leu Uncertain significance Multiple submitters
- PISD p.Pro175Thr Uncertain significance Multiple submitters
-
PISD p.Arg170Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Arg170Trp
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Arg246Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Arg293Cys Uncertain significance Single submitter
-
PISD p.Arg335Trp
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Arg81Gly Uncertain significance Single submitter
- PISD p.Gly74Asp Uncertain significance Single submitter
- PISD p.Gly95Glu Uncertain significance Single submitter
- PISD p.His301Arg Uncertain significance Single submitter
- PISD p.Lys296Thr Uncertain significance Single submitter
- PISD p.Thr116Met Uncertain significance Single submitter
-
PISD p.Thr319Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
PISD p.Trp294Cys
Uncertain significance
Single submitter
Inborn genetic diseases
- PISD p.Arg65His Uncertain significance No assertion criteria
All PISD variants
Pathogenic 4
- p.Leu215fs Single submitter
- p.Pro18fs Single submitter
- p.Ser113fs Single submitter
- c.1006-12_1006-3del No assertion criteria Liberfarb syndrome
Pathogenic/Likely pathogenic 2
- p.Cys300Tyr Multiple submitters Liberfarb syndrome
- c.697+5G>A No assertion criteria Liberfarb syndrome
Likely pathogenic 2
- c.559-1G>C Single submitter
- c.698-2A>G Single submitter
Conflicting classifications of pathogenicity 5
- c.845-2A>G Single submitter
- p.Arg277Gln Single submitter Liberfarb syndrome ⚠
- p.Arg335Gln Single submitter Inborn genetic diseases ⚠
- p.Arg366His Single submitter Inborn genetic diseases ⚠
- p.Val363Ile Single submitter Inborn genetic diseases ⚠
Benign 4
- p.Arg81Gln Multiple submitters
- p.Phe354= Multiple submitters
- c.146-8dup Single submitter
- p.Ile28Thr Single submitter
Benign/Likely benign 9
- c.1006-17C>A Multiple submitters
- c.697+19G>C Multiple submitters
- c.844+8C>T Multiple submitters
- p.Ala50Val Multiple submitters
- p.Arg178= Multiple submitters
- p.Gly362= Multiple submitters
- p.Ile144= Multiple submitters
- p.Thr308Met Multiple submitters
- p.Val355Met Multiple submitters
Likely benign 81
- c.1006-13C>T Multiple submitters
- c.698-19G>A Multiple submitters
- c.698-20C>T Multiple submitters
- c.844+17C>T Multiple submitters
- c.844+18G>A Multiple submitters
- c.844+20G>C Multiple submitters
- c.844+20G>T Multiple submitters
- c.844+9G>A Multiple submitters
- p.Ala154= Multiple submitters
- p.Ala177= Multiple submitters
- p.Ala233= Multiple submitters
- p.Ala234= Multiple submitters
- p.Arg171= Multiple submitters
- p.Arg44Ile Multiple submitters
- p.Asn302= Multiple submitters
- p.Asn391= Multiple submitters
- p.Glu250= Multiple submitters
- p.Glu361= Multiple submitters
- p.Gly372= Multiple submitters
- p.His14= Multiple submitters
- p.Ile256= Multiple submitters
- p.Ile380= Multiple submitters
- p.Leu219= Multiple submitters
- p.Leu298= Multiple submitters
- p.Phe333= Multiple submitters
- p.Pro175= Multiple submitters
- p.Ser190= Multiple submitters
- p.Thr146= Multiple submitters
- p.Thr270= Multiple submitters
- p.Thr308= Multiple submitters
- p.Thr356= Multiple submitters
- p.Tyr111= Multiple submitters
- c.1005+10A>C Single submitter
- c.1005+7A>G Single submitter
- c.1006-18C>T Single submitter
- c.1006-5C>T Single submitter
- c.145+12T>C Single submitter
- c.321+4G>A Single submitter
- c.322-5T>C Single submitter
- c.322-7C>T Single submitter
- c.558+18C>T Single submitter
- c.559-18C>T Single submitter
- c.66-16T>C Single submitter
- c.697+18C>T Single submitter
- c.697+19G>A Single submitter
- c.697+20G>A Single submitter
- c.698-22_698-20del Single submitter
- c.698-9A>C Single submitter
- c.844+20G>A Single submitter
- c.845-13C>T Single submitter
- c.845-4G>A Single submitter
- c.845-6C>T Single submitter
- c.*18T>C Single submitter
- c.*5T>C Single submitter
- p.Ala386= Single submitter
- p.Arg117= Single submitter
- p.Arg330= Single submitter
- p.Arg335= Single submitter
- p.Arg366= Single submitter
- p.Asn325= Single submitter
- p.Asp237= Single submitter
- p.Cys26= Single submitter
- p.Glu27= Single submitter
- p.Gly182= Single submitter
- p.Gly74= Single submitter
- p.Gly75= Single submitter
- p.Leu159= Single submitter
- p.Leu243= Single submitter
- p.Leu307= Single submitter
- p.Leu406= Single submitter
- p.Leu63= Single submitter
- p.Pro138= Single submitter
- p.Pro221= Single submitter
- p.Pro37= Single submitter
- p.Ser217= Single submitter
- p.Thr116= Single submitter
- p.Tyr143= Single submitter
- p.Val244= Single submitter
- p.Val305= Single submitter
- p.Val363Leu Single submitter
- p.Val381= Single submitter
Uncertain significance 99
- p.Ala234Val Multiple submitters Inborn genetic diseases ⚠
- p.Ala386Val Multiple submitters Inborn genetic diseases ⚠
- p.Arg125Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg125His Multiple submitters Inborn genetic diseases ⚠
- p.Arg136His Multiple submitters Inborn genetic diseases ⚠
- p.Arg163Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg163His Multiple submitters ⚠
- p.Arg170Gln Multiple submitters Inborn genetic diseases ⚠
- p.Arg222Cys Multiple submitters Inborn genetic diseases ⚠
- p.Arg222Leu Multiple submitters Inborn genetic diseases ⚠
- p.Arg330His Multiple submitters Inborn genetic diseases ⚠
- p.Arg366Pro Multiple submitters Inborn genetic diseases ⚠
- p.Arg401Cys Multiple submitters Inborn genetic diseases ⚠
- p.Asn127Ser Multiple submitters Inborn genetic diseases ⚠
- p.Asn196Ser Multiple submitters Inborn genetic diseases ⚠
- p.Asp271Asn Multiple submitters Inborn genetic diseases ⚠
- p.Glu226Asp Multiple submitters Inborn genetic diseases ⚠
- p.Gly397Arg Multiple submitters Inborn genetic diseases ⚠
- p.His161Leu Multiple submitters ⚠
- p.Phe168Leu Multiple submitters Inborn genetic diseases ⚠
- p.Pro175Thr Multiple submitters ⚠
- p.Pro221Leu Multiple submitters Inborn genetic diseases
- p.Ser190Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ser217Leu Multiple submitters Inborn genetic diseases ⚠
- p.Ser235Leu Multiple submitters Inborn genetic diseases ⚠
- p.Val180Ile Multiple submitters Inborn genetic diseases ⚠
- c.321+5G>C Single submitter
- c.844+5G>A Single submitter
- p.Ala122Val Single submitter Inborn genetic diseases ⚠
- p.Ala17Thr Single submitter ⚠
- p.Ala234Thr Single submitter ⚠
- p.Arg121Gln Single submitter
- p.Arg137Lys Single submitter ⚠
- p.Arg170Leu Single submitter Inborn genetic diseases ⚠
- p.Arg170Trp Single submitter Inborn genetic diseases ⚠
- p.Arg171His Single submitter ⚠
- p.Arg178Gln Single submitter ⚠
- p.Arg178Trp Single submitter Inborn genetic diseases ⚠
- p.Arg246Trp Single submitter Inborn genetic diseases ⚠
- p.Arg277Trp Single submitter Inborn genetic diseases ⚠
- p.Arg293Cys Single submitter ⚠
- p.Arg293His Single submitter ⚠
- p.Arg335Trp Single submitter Inborn genetic diseases ⚠
- p.Arg39Gly Single submitter ⚠
- p.Arg401His Single submitter Inborn genetic diseases ⚠
- p.Arg47His Single submitter ⚠
- p.Arg81Gly Single submitter ⚠
- p.Arg81Trp Single submitter ⚠
- p.Asn164Ser Single submitter ⚠
- p.Asn202Asp Single submitter Inborn genetic diseases ⚠
- p.Asn325Ser Single submitter Inborn genetic diseases ⚠
- p.Asn391_Phe392insTyr Single submitter
- p.Cys265Tyr Single submitter ⚠
- p.Gln207Pro Single submitter ⚠
- p.Gln398Glu Single submitter ⚠
- p.Glu216Gly Single submitter Inborn genetic diseases ⚠
- p.Glu226Gln Single submitter Inborn genetic diseases ⚠
- p.Glu385Lys Single submitter Inborn genetic diseases ⚠
- p.Glu88Asp Single submitter ⚠
- p.Glu97Ala Single submitter ⚠
- p.Glu97Asp Single submitter ⚠
- p.Gly368Asp Single submitter ⚠
- p.Gly74Asp Single submitter ⚠
- p.Gly95Glu Single submitter ⚠
- p.His133Pro Single submitter Inborn genetic diseases ⚠
- p.His264Tyr Single submitter Inborn genetic diseases ⚠
- p.His301Arg Single submitter ⚠
- p.His344Asn Single submitter Inborn genetic diseases ⚠
- p.Leu409Phe Single submitter ⚠
- p.Leu64Gln Single submitter ⚠
- p.Lys112Thr Single submitter Inborn genetic diseases
- p.Lys296Thr Single submitter ⚠
- p.Lys312Glu Single submitter ⚠
- p.Met291Ile Single submitter ⚠
- p.Phe315Cys Single submitter ⚠
- p.Pro132Ser Single submitter Inborn genetic diseases ⚠
- p.Pro232Leu Single submitter ⚠
- p.Pro364Ala Single submitter Inborn genetic diseases ⚠
- p.Pro66Ala Single submitter ⚠
- p.Ser185Gly Single submitter Inborn genetic diseases ⚠
- p.Ser328Phe Single submitter ⚠
- p.Ser348Phe Single submitter Inborn genetic diseases ⚠
- p.Ser408Leu Single submitter ⚠
- p.Thr116Arg Single submitter Inborn genetic diseases ⚠
- p.Thr116Met Single submitter ⚠
- p.Thr146Met Single submitter Inborn genetic diseases ⚠
- p.Thr273Ile Single submitter Inborn genetic diseases ⚠
- p.Thr319Ala Single submitter Inborn genetic diseases ⚠
- p.Thr356Arg Single submitter ⚠
- p.Thr356Lys Single submitter Inborn genetic diseases ⚠
- p.Thr358Ser Single submitter ⚠
- p.Trp294Cys Single submitter Inborn genetic diseases ⚠
- p.Tyr252Cys Single submitter Inborn genetic diseases
- p.Val139Ile Single submitter ⚠
- p.Val186Met Single submitter ⚠
- p.Val326Leu Single submitter Inborn genetic diseases ⚠
- p.Val363fs Single submitter
- p.Val381Met Single submitter ⚠
- p.Arg65His No assertion criteria ⚠