PTPRO — 512 ClinVar variants

All ClinVar germline PTPRO variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 227 flagged for review →

5 Pathogenic · 5 Likely pathogenic · 8 Conflicting · 69 Benign · 22 Benign/Likely benign · 140 Likely benign · 263 Uncertain significance

Full PTPRO gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 227

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 2

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 176

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 176

Predictors split 49

The independent predictors disagree with each other — read with care.

All PTPRO variants

Pathogenic 5

Likely pathogenic 5

Conflicting classifications of pathogenicity 8

Benign 69

Benign/Likely benign 22

Likely benign 140

Uncertain significance 263