SARS2 — 358 ClinVar variants

All ClinVar germline SARS2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 138 flagged for review →

2 Pathogenic · 3 Likely pathogenic · 24 Conflicting · 28 Benign · 10 Benign/Likely benign · 116 Likely benign · 175 Uncertain significance

Full SARS2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 138

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 83

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 51

The independent predictors disagree with each other — read with care.

All SARS2 variants

Pathogenic 2

  • c.589+1G>A Single submitter
  • p.Phe348Leu No assertion criteria hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome

Likely pathogenic 3

  • c.1413+1G>C Single submitter
  • p.Asp390Gly Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Glu352Ala Single submitter SARS2-associated condition

Conflicting classifications of pathogenicity 24

  • c.1347+10G>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.364-7C>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.534+10G>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.589+4G>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.590-5T>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.654-11C>G Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.917-4C>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Ala167= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Ala300= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Arg104Trp Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg118Trp Single submitter ⚠
  • p.Arg232Cys Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg252His Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg31Gly Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg402His Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg431His Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gln130= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Gln201= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Leu296= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Thr259= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Thr439= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Thr439Ser Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Thr449= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Val180Ile Single submitter ⚠

Benign 28

Benign/Likely benign 10

  • c.1254+10G>C Multiple submitters
  • c.1348-19G>A Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.364-14C>T Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.393+149del Multiple submitters
  • c.963-17T>C Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Arg232= Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Asp177= Multiple submitters
  • p.Leu511_Gly513dup Multiple submitters
  • p.Ser91= Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Val192= Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome

Likely benign 116

Uncertain significance 175

  • c.759+4T>C Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.-5C>A Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Ala167Val Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala463Val Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala516Ser Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala73Pro Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg118Gln Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg139Trp Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg143Gln Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg143Gly Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg15Pro Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg227Gln Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg227Trp Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg253Gln Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg265Cys Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg330Trp Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg413Gln Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg415His Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg431Cys Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg432Cys Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg432His Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg507Gly Multiple submitters ⚠
  • p.Arg77Leu Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Asn468Lys Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Asp125Asn Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Asp213Asn Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Asp293Asn Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gln217Pro Multiple submitters ⚠
  • p.Glu46Lys Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gly266Arg Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gly383Ser Multiple submitters ⚠
  • p.Gly473Ser Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gly513_Pro515del Multiple submitters
  • p.Gly513Asp Multiple submitters ⚠
  • p.Gly513Ser Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ile286Met Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ile501Val Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Leu149Pro Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Leu159His Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Leu481His Multiple submitters ⚠
  • p.Leu498Pro Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Phe200Leu Multiple submitters ⚠
  • p.Trp93Ter Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Val150Ile Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Val313Met Multiple submitters hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • c.1161-11C>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.1255-3C>T Single submitter
  • c.1348-13G>A Single submitter
  • c.1413+4_1413+6del Single submitter
  • c.363+6C>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.364-13T>C Single submitter
  • c.394-5C>G Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.535-15G>C Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.589+1del Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.653+2_653+3del Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.759+3A>G Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.916+16G>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.916+1G>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.963-10T>C Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.-106A>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.-19G>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.*131C>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.*140C>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.*224C>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.*22C>A Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.*22C>T Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.*250A>G Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • c.*341G>C Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Ala186Ser Single submitter ⚠
  • p.Ala234Pro Single submitter ⚠
  • p.Ala234Val Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala236Val Single submitter ⚠
  • p.Ala297Ser Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala314Ser Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala400Asp Single submitter ⚠
  • p.Ala400Thr Single submitter ⚠
  • p.Ala441Ser Single submitter ⚠
  • p.Ala441Thr Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala447Val Single submitter ⚠
  • p.Ala463Ser Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala480Val Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ala516Pro Single submitter ⚠
  • p.Arg146Trp Single submitter ⚠
  • p.Arg187Gln Single submitter ⚠
  • p.Arg187Ter Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Arg19Gly Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg203Trp Single submitter ⚠
  • p.Arg219Cys Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg219Leu Single submitter ⚠
  • p.Arg227= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Arg232His Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg265His Single submitter ⚠
  • p.Arg265Pro Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg290Cys Single submitter ⚠
  • p.Arg340Gln Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg340Trp Single submitter ⚠
  • p.Arg344Pro Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Arg344Ter Single submitter
  • p.Arg415Cys Single submitter ⚠
  • p.Arg459His Single submitter ⚠
  • p.Arg489Gln Single submitter ⚠
  • p.Arg507Trp Single submitter ⚠
  • p.Asn248Lys Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Asn277Asp Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Asn279Lys Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Asn279Tyr Single submitter ⚠
  • p.Asp125fs Single submitter
  • p.Asp177Glu Single submitter ⚠
  • p.Asp194fs Single submitter
  • p.Asp310Gly Single submitter ⚠
  • p.Asp317Gly Single submitter ⚠
  • p.Asp472Leu Single submitter
  • p.Asp59Gly Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Cys324Ser Single submitter
  • p.Gln162Arg Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gln217Lys Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gln363His Single submitter ⚠
  • p.Gln429Arg Single submitter ⚠
  • p.Gln429Ter Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Gln514Glu Single submitter ⚠
  • p.Glu101Asp Single submitter ⚠
  • p.Glu115Gly Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Glu362Lys Single submitter ⚠
  • p.Glu362Ter Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Glu381fs Single submitter
  • p.Glu440Lys Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Glu75fs Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Gly17Glu Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gly181Arg Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gly193Arg Single submitter ⚠
  • p.Gly233Arg Single submitter ⚠
  • p.Gly241Ser Single submitter ⚠
  • p.Gly486Ser Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Gly502Ser Single submitter ⚠
  • p.His205Tyr Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ile490Phe Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Leu152Gln Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Leu152Met Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Leu189Phe Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Leu212Val Single submitter ⚠
  • p.Leu384Ter Single submitter
  • p.Leu476= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Leu485His Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Met191Thr Single submitter ⚠
  • p.Met274Leu Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Pro276Thr Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Pro280Leu Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Pro288Ser Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Pro478Ser Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Pro503Ala Single submitter ⚠
  • p.Ser105Arg Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ser364Asn Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ser364Gly Single submitter ⚠
  • p.Ser467Asn Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ser4Phe Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Ser83= Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Thr312Ala Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Thr335Lys Single submitter ⚠
  • p.Thr335Met Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Thr449Met Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Thr491Ile Single submitter ⚠
  • p.Thr494Ile Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome ⚠
  • p.Tyr164Cys Single submitter ⚠
  • p.Val113Met Single submitter ⚠
  • p.Val178Met Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Val188Gly Single submitter ⚠
  • p.Val223Leu Single submitter
  • p.Val223Met Single submitter hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome
  • p.Val302Leu Single submitter ⚠
  • p.Val351= Single submitter
  • p.Val475Met Single submitter ⚠
  • p.Val477Leu Single submitter ⚠
  • p.Val477Met Single submitter ⚠
  • p.Gln514Leu No assertion criteria ⚠
  • p.Glu466fs No assertion criteria