SMARCC2 — 468 ClinVar variants

All ClinVar germline SMARCC2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 274 flagged for review →

20 Pathogenic · 9 Pathogenic/Likely pathogenic · 34 Likely pathogenic · 11 Conflicting · 20 Benign · 1 Benign/Likely benign · 77 Likely benign · 296 Uncertain significance

Full SMARCC2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 274

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 5

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 191

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 191

Predictors split 74

The independent predictors disagree with each other — read with care.

All SMARCC2 variants

Pathogenic 20

Pathogenic/Likely pathogenic 9

  • c.1311-3C>G Multiple submitters Coffin-Siris syndrome 8
  • c.1926+1G>A Multiple submitters SMARCC2-related disorder
  • c.1926+1G>T Multiple submitters Coffin-Siris syndrome 8
  • c.1926+2T>C Multiple submitters Coffin-Siris syndrome 8
  • p.Arg192Ter Multiple submitters Coffin-Siris syndrome 8
  • p.Arg269Ter Multiple submitters Coffin-Siris syndrome 8
  • p.Arg474Ter Multiple submitters Coffin-Siris syndrome 8
  • p.Lys365fs Multiple submitters Coffin-Siris syndrome 8
  • p.Tyr109Ter Multiple submitters Neurodevelopmental delay

Likely pathogenic 34

Conflicting classifications of pathogenicity 11

Benign 20

Benign/Likely benign 1

Likely benign 77

Uncertain significance 296