STK11 — 2449 ClinVar variants

All ClinVar germline STK11 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 909 flagged for review →

226 Pathogenic · 25 Pathogenic/Likely pathogenic · 66 Likely pathogenic · 303 Conflicting · 78 Benign · 245 Benign/Likely benign · 520 Likely benign · 986 Uncertain significance

Full STK11 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 909

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 146

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predicted LoF vs a conflicting call 4

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

Predictors lean, ClinVar uncertain 571

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 571

Predictors split 188

The independent predictors disagree with each other — read with care. · showing the 150 best-reviewed of 188

All STK11 variants

Pathogenic 226

Pathogenic/Likely pathogenic 25

  • c.290+2T>A Multiple submitters Peutz-Jeghers syndrome
  • c.464+1G>A Multiple submitters hereditary neoplastic syndrome
  • c.465-1G>A Multiple submitters hereditary neoplastic syndrome
  • c.734+1G>T Multiple submitters hereditary neoplastic syndrome
  • c.735-1G>A Multiple submitters hereditary neoplastic syndrome
  • c.863-1G>C Multiple submitters Peutz-Jeghers syndrome
  • c.863-2_863-1del Multiple submitters hereditary neoplastic syndrome
  • c.920+1G>A Multiple submitters hereditary neoplastic syndrome
  • c.921-1G>C Multiple submitters hereditary neoplastic syndrome
  • p.300IRQ[1] Multiple submitters Peutz-Jeghers syndrome
  • p.Arg297Ser Multiple submitters Peutz-Jeghers syndrome
  • p.Arg304Pro Multiple submitters hereditary neoplastic syndrome
  • p.Arg304Trp Multiple submitters hereditary neoplastic syndrome
  • p.Asn181Ser Multiple submitters hereditary neoplastic syndrome
  • p.Asp194Asn Multiple submitters hereditary neoplastic syndrome
  • p.Cys210Ter Multiple submitters hereditary neoplastic syndrome
  • p.Glu120Ter Multiple submitters Peutz-Jeghers syndrome
  • p.Glu57fs Multiple submitters hereditary neoplastic syndrome
  • p.Gly155fs Multiple submitters hereditary neoplastic syndrome
  • p.His306Tyr Multiple submitters Peutz-Jeghers syndrome
  • p.Leu67fs Multiple submitters Peutz-Jeghers syndrome
  • p.Leu67Pro Multiple submitters hereditary neoplastic syndrome
  • p.Lys48fs Multiple submitters Peutz-Jeghers syndrome
  • p.Met11fs Multiple submitters Peutz-Jeghers syndrome
  • p.Thr328fs Multiple submitters hereditary neoplastic syndrome

Likely pathogenic 66

Conflicting classifications of pathogenicity 303

Showing the top 300 by review status; the full set is in the sitemap.

Benign 78

Benign/Likely benign 245

  • c.1109-13G>A Multiple submitters hereditary neoplastic syndrome
  • c.1109-14C>T Multiple submitters hereditary neoplastic syndrome
  • c.1109-5C>T Multiple submitters hereditary neoplastic syndrome
  • c.464+10C>T Multiple submitters Peutz-Jeghers syndrome
  • c.464+20del Multiple submitters hereditary neoplastic syndrome
  • c.464+32CGGGGGC[3] Multiple submitters
  • c.464+44dup Multiple submitters squamous cell lung carcinoma
  • c.464+8C>T Multiple submitters familial ovarian cancer
  • c.464+9G>A Multiple submitters Breast and/or ovarian cancer
  • c.465-17G>A Multiple submitters hereditary neoplastic syndrome
  • c.465-17GT[2] Multiple submitters hereditary neoplastic syndrome
  • c.465-18G>T Multiple submitters hereditary neoplastic syndrome
  • c.597+14del Multiple submitters Breast and/or ovarian cancer
  • c.597+21del Multiple submitters hereditary neoplastic syndrome
  • c.597+21dup Multiple submitters Breast and/or ovarian cancer
  • c.597+8C>T Multiple submitters familial ovarian cancer
  • c.598-7G>A Multiple submitters Breast and/or ovarian cancer
  • c.598-8C>T Multiple submitters exocrine pancreatic carcinoma
  • c.734+17C>G Multiple submitters Peutz-Jeghers syndrome
  • c.735-10C>T Multiple submitters hereditary neoplastic syndrome
  • c.735-9G>A Multiple submitters hereditary neoplastic syndrome
  • c.863-16G>A Multiple submitters Peutz-Jeghers syndrome
  • c.863-6C>T Multiple submitters Peutz-Jeghers syndrome
  • c.920+12C>T Multiple submitters hereditary neoplastic syndrome
  • c.921-10G>A Multiple submitters Breast and/or ovarian cancer
  • c.921-9C>T Multiple submitters hereditary neoplastic syndrome
  • c.-127T>C Multiple submitters Peutz-Jeghers syndrome
  • c.-137C>T Multiple submitters Peutz-Jeghers syndrome
  • c.-311C>T Multiple submitters Peutz-Jeghers syndrome
  • c.-430C>T Multiple submitters Peutz-Jeghers syndrome
  • c.*16+12C>T Multiple submitters
  • c.*317C>G Multiple submitters Peutz-Jeghers syndrome
  • c.*460G>A Multiple submitters hereditary neoplastic syndrome
  • p.Ala153= Multiple submitters Peutz-Jeghers syndrome
  • p.Ala198= Multiple submitters hereditary neoplastic syndrome
  • p.Ala205= Multiple submitters hereditary neoplastic syndrome
  • p.Ala218= Multiple submitters hereditary neoplastic syndrome
  • p.Ala241= Multiple submitters Breast and/or ovarian cancer
  • p.Ala318= Multiple submitters hereditary neoplastic syndrome
  • p.Ala397= Multiple submitters hereditary neoplastic syndrome
  • p.Ala398= Multiple submitters Peutz-Jeghers syndrome
  • p.Ala406= Multiple submitters hereditary neoplastic syndrome
  • p.Ala410= Multiple submitters Peutz-Jeghers syndrome
  • p.Ala414= Multiple submitters Peutz-Jeghers syndrome
  • p.Ala420= Multiple submitters hereditary neoplastic syndrome
  • p.Ala43= Multiple submitters hereditary neoplastic syndrome
  • p.Ala76= Multiple submitters hereditary neoplastic syndrome
  • p.Arg103= Multiple submitters hereditary neoplastic syndrome
  • p.Arg104= Multiple submitters hereditary neoplastic syndrome
  • p.Arg106= Multiple submitters Peutz-Jeghers syndrome
  • p.Arg147= Multiple submitters hereditary neoplastic syndrome
  • p.Arg28= Multiple submitters hereditary neoplastic syndrome
  • p.Arg297= Multiple submitters hereditary neoplastic syndrome
  • p.Arg301= Multiple submitters hereditary neoplastic syndrome
  • p.Arg310= Multiple submitters Peutz-Jeghers syndrome
  • p.Arg383= Multiple submitters hereditary neoplastic syndrome
  • p.Arg384= Multiple submitters hereditary neoplastic syndrome
  • p.Arg39= Multiple submitters hereditary neoplastic syndrome
  • p.Arg405= Multiple submitters hereditary neoplastic syndrome
  • p.Arg415= Multiple submitters hereditary neoplastic syndrome
  • p.Arg425= Multiple submitters Peutz-Jeghers syndrome
  • p.Arg426= Multiple submitters hereditary neoplastic syndrome
  • p.Arg75= Multiple submitters Peutz-Jeghers syndrome
  • p.Arg86= Multiple submitters Peutz-Jeghers syndrome
  • p.Asn109= Multiple submitters hereditary neoplastic syndrome
  • p.Asn226= Multiple submitters hereditary neoplastic syndrome
  • p.Asn247= Multiple submitters hereditary neoplastic syndrome
  • p.Asn259= Multiple submitters Breast and/or ovarian cancer
  • p.Asn266= Multiple submitters hereditary neoplastic syndrome
  • p.Asn380= Multiple submitters hereditary neoplastic syndrome
  • p.Asn393= Multiple submitters hereditary neoplastic syndrome
  • p.Asn90= Multiple submitters hereditary neoplastic syndrome
  • p.Asp162= Multiple submitters hereditary neoplastic syndrome
  • p.Asp176= Multiple submitters hereditary neoplastic syndrome
  • p.Asp194= Multiple submitters hereditary neoplastic syndrome
  • p.Asp207= Multiple submitters hereditary neoplastic syndrome
  • p.Asp229= Multiple submitters Peutz-Jeghers syndrome
  • p.Asp30= Multiple submitters hereditary neoplastic syndrome
  • p.Asp327= Multiple submitters hereditary neoplastic syndrome
  • p.Asp53= Multiple submitters Peutz-Jeghers syndrome
  • p.Asp68= Multiple submitters hereditary neoplastic syndrome
  • p.Cys134= Multiple submitters Peutz-Jeghers syndrome
  • p.Cys151= Multiple submitters hereditary neoplastic syndrome
  • p.Cys210= Multiple submitters hereditary neoplastic syndrome
  • p.Cys391= Multiple submitters hereditary neoplastic syndrome
  • p.Cys418= Multiple submitters hereditary neoplastic syndrome
  • p.Cys73= Multiple submitters hereditary neoplastic syndrome
  • p.Gln100= Multiple submitters hereditary neoplastic syndrome
  • p.Gln123= Multiple submitters Breast and/or ovarian cancer
  • p.Gln152= Multiple submitters hereditary neoplastic syndrome
  • p.Gln305= Multiple submitters hereditary neoplastic syndrome
  • p.Gln371= Multiple submitters hereditary neoplastic syndrome
  • p.Gln7= Multiple submitters hereditary neoplastic syndrome
  • p.Gln8= Multiple submitters Peutz-Jeghers syndrome
  • p.Glu120= Multiple submitters hereditary neoplastic syndrome
  • p.Glu138= Multiple submitters hereditary neoplastic syndrome
  • p.Glu14= Multiple submitters familial pancreatic carcinoma
  • p.Glu145= Multiple submitters Peutz-Jeghers syndrome
  • p.Glu16= Multiple submitters hereditary neoplastic syndrome
  • p.Glu165= Multiple submitters hereditary neoplastic syndrome
  • p.Glu2= Multiple submitters hereditary neoplastic syndrome
  • p.Glu265= Multiple submitters Breast and/or ovarian cancer
  • p.Glu293= Multiple submitters Peutz-Jeghers syndrome
  • p.Glu317= Multiple submitters hereditary neoplastic syndrome
  • p.Glu33= Multiple submitters hereditary neoplastic syndrome
  • p.Glu374= Multiple submitters Peutz-Jeghers syndrome
  • p.Glu376= Multiple submitters hereditary neoplastic syndrome
  • p.Glu57= Multiple submitters hereditary neoplastic syndrome
  • p.Glu92= Multiple submitters hereditary neoplastic syndrome
  • p.Gly10= Multiple submitters hereditary neoplastic syndrome
  • p.Gly171= Multiple submitters hereditary neoplastic syndrome
  • p.Gly215= Multiple submitters hereditary neoplastic syndrome
  • p.Gly227= Multiple submitters hereditary neoplastic syndrome
  • p.Gly233= Multiple submitters Peutz-Jeghers syndrome
  • p.Gly242= Multiple submitters melanoma, cutaneous malignant, susceptibility to, 1
  • p.Gly257= Multiple submitters hereditary neoplastic syndrome
  • p.Gly270= Multiple submitters hereditary neoplastic syndrome
  • p.Gly279= Multiple submitters hereditary neoplastic syndrome
  • p.Gly385= Multiple submitters Peutz-Jeghers syndrome
  • p.Gly408= Multiple submitters Peutz-Jeghers syndrome
  • p.Gly52= Multiple submitters hereditary neoplastic syndrome
  • p.Gly61= Multiple submitters Peutz-Jeghers syndrome
  • p.Gly91= Multiple submitters hereditary neoplastic syndrome
  • p.His107= Multiple submitters hereditary neoplastic syndrome
  • p.His168= Multiple submitters Peutz-Jeghers syndrome
  • p.His379= Multiple submitters hereditary neoplastic syndrome
  • p.Ile161= Multiple submitters hereditary neoplastic syndrome
  • p.Ile172= Multiple submitters Peutz-Jeghers syndrome
  • p.Ile177= Multiple submitters Peutz-Jeghers syndrome
  • p.Ile192= Multiple submitters Peutz-Jeghers syndrome
  • p.Ile224= Multiple submitters Peutz-Jeghers syndrome
  • p.Ile260= Multiple submitters hereditary neoplastic syndrome
  • p.Ile267= Multiple submitters hereditary neoplastic syndrome
  • p.Ile29= Multiple submitters Peutz-Jeghers syndrome
  • p.Ile300= Multiple submitters hereditary neoplastic syndrome
  • p.Ile35= Multiple submitters Peutz-Jeghers syndrome
  • p.Ile424= Multiple submitters hereditary neoplastic syndrome
  • p.Ile46= Multiple submitters hereditary neoplastic syndrome
  • p.Ile79= Multiple submitters Peutz-Jeghers syndrome
  • p.Ile88= Multiple submitters hereditary neoplastic syndrome
  • p.Leu101= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu105= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu117= Multiple submitters hereditary neoplastic syndrome
  • p.Leu140= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu164= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu17= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu183= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu184= Multiple submitters hereditary neoplastic syndrome
  • p.Leu190= Multiple submitters hereditary neoplastic syndrome
  • p.Leu195= Multiple submitters hereditary neoplastic syndrome
  • p.Leu201= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu228= Multiple submitters hereditary neoplastic syndrome
  • p.Leu252= Multiple submitters hereditary neoplastic syndrome
  • p.Leu263= Multiple submitters Breast and/or ovarian cancer
  • p.Leu285= Multiple submitters hereditary neoplastic syndrome
  • p.Leu286= Multiple submitters hereditary neoplastic syndrome
  • p.Leu290= Multiple submitters hereditary neoplastic syndrome
  • p.Leu400= Multiple submitters hereditary neoplastic syndrome
  • p.Leu72= Multiple submitters hereditary neoplastic syndrome
  • p.Leu80= Multiple submitters Peutz-Jeghers syndrome
  • p.Leu85= Multiple submitters Peutz-Jeghers syndrome
  • p.Lys122= Multiple submitters Breast and/or ovarian cancer
  • p.Lys175= Multiple submitters Peutz-Jeghers syndrome
  • p.Lys178= Multiple submitters hereditary neoplastic syndrome
  • p.Lys269= Multiple submitters Peutz-Jeghers syndrome
  • p.Lys311= Multiple submitters Peutz-Jeghers syndrome
  • p.Lys312= Multiple submitters hereditary neoplastic syndrome
  • p.Lys388= Multiple submitters hereditary neoplastic syndrome
  • p.Lys416= Multiple submitters hereditary neoplastic syndrome
  • p.Lys48= Multiple submitters hereditary neoplastic syndrome
  • p.Lys62= Multiple submitters hereditary neoplastic syndrome
  • p.Lys64= Multiple submitters hereditary neoplastic syndrome
  • p.Lys78= Multiple submitters hereditary neoplastic syndrome
  • p.Lys81= Multiple submitters hereditary neoplastic syndrome
  • p.Lys82= Multiple submitters hereditary neoplastic syndrome
  • p.Lys83= Multiple submitters Peutz-Jeghers syndrome
  • p.Lys96= Multiple submitters hereditary neoplastic syndrome
  • p.Met392Ile Multiple submitters Peutz-Jeghers syndrome
  • p.Phe12= Multiple submitters Peutz-Jeghers syndrome
  • p.Phe157= Multiple submitters hereditary neoplastic syndrome
  • p.Phe234= Multiple submitters Peutz-Jeghers syndrome
  • p.Phe25= Multiple submitters hereditary neoplastic syndrome
  • p.Phe255= Multiple submitters hereditary neoplastic syndrome
  • p.Phe264= Multiple submitters Peutz-Jeghers syndrome
  • p.Pro144= Multiple submitters hereditary neoplastic syndrome
  • p.Pro179= Multiple submitters hereditary neoplastic syndrome
  • p.Pro203= Multiple submitters hereditary neoplastic syndrome
  • p.Pro221= Multiple submitters hereditary neoplastic syndrome
  • p.Pro222= Multiple submitters hereditary neoplastic syndrome
  • p.Pro254= Multiple submitters hereditary neoplastic syndrome
  • p.Pro275= Multiple submitters hereditary neoplastic syndrome
  • p.Pro281= Multiple submitters hereditary neoplastic syndrome
  • p.Pro294= Multiple submitters hereditary neoplastic syndrome
  • p.Pro315= Multiple submitters Breast and/or ovarian cancer
  • p.Pro321= Multiple submitters hereditary neoplastic syndrome
  • p.Pro324= Multiple submitters Peutz-Jeghers syndrome
  • p.Pro326= Multiple submitters hereditary neoplastic syndrome
  • p.Pro373= Multiple submitters hereditary neoplastic syndrome
  • p.Pro38= Multiple submitters hereditary neoplastic syndrome
  • p.Pro387= Multiple submitters hereditary neoplastic syndrome
  • p.Pro413= Multiple submitters hereditary neoplastic syndrome
  • p.Ser142= Multiple submitters hereditary neoplastic syndrome
  • p.Ser19= Multiple submitters Peutz-Jeghers syndrome
  • p.Ser213= Multiple submitters Peutz-Jeghers syndrome
  • p.Ser216= Multiple submitters hereditary neoplastic syndrome
  • p.Ser232= Multiple submitters hereditary neoplastic syndrome
  • p.Ser283= Multiple submitters hereditary neoplastic syndrome
  • p.Ser299= Multiple submitters hereditary neoplastic syndrome
  • p.Ser31= Multiple submitters hereditary neoplastic syndrome
  • p.Ser378= Multiple submitters Peutz-Jeghers syndrome
  • p.Ser401= Multiple submitters hereditary neoplastic syndrome
  • p.Ser404= Multiple submitters hereditary neoplastic syndrome
  • p.Ser419= Multiple submitters hereditary neoplastic syndrome
  • p.Ser69= Multiple submitters hereditary neoplastic syndrome
  • p.Thr185= Multiple submitters hereditary neoplastic syndrome
  • p.Thr186= Multiple submitters hereditary neoplastic syndrome
  • p.Thr189= Multiple submitters hereditary neoplastic syndrome
  • p.Thr230= Multiple submitters hereditary neoplastic syndrome
  • p.Thr24= Multiple submitters Peutz-Jeghers syndrome
  • p.Thr244= Multiple submitters hereditary neoplastic syndrome
  • p.Thr32= Multiple submitters hereditary neoplastic syndrome
  • p.Thr402= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr118= Multiple submitters Peutz-Jeghers syndrome
  • p.Tyr131= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr156= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr166= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr246= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr253= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr261= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr272= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr292= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr36= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr49= Multiple submitters hereditary neoplastic syndrome
  • p.Tyr60= Multiple submitters hereditary neoplastic syndrome
  • p.Val110= Multiple submitters hereditary neoplastic syndrome
  • p.Val114= Multiple submitters Peutz-Jeghers syndrome
  • p.Val116= Multiple submitters Peutz-Jeghers syndrome
  • p.Val173= Multiple submitters hereditary neoplastic syndrome
  • p.Val243= Multiple submitters Peutz-Jeghers syndrome
  • p.Val3= Multiple submitters hereditary neoplastic syndrome
  • p.Val34= Multiple submitters hereditary neoplastic syndrome
  • p.Val390= Multiple submitters hereditary neoplastic syndrome
  • p.Val4= Multiple submitters hereditary neoplastic syndrome
  • p.Val77= Multiple submitters hereditary neoplastic syndrome
  • p.Val95= Multiple submitters hereditary neoplastic syndrome

Likely benign 520

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 986

Showing the top 300 by review status; the full set is in the sitemap.