STS — 194 ClinVar variants
All ClinVar germline STS variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 98 flagged for review →
7 Pathogenic · 13 Likely pathogenic · 11 Conflicting · 31 Benign · 8 Benign/Likely benign · 37 Likely benign · 87 Uncertain significance
Full STS gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 98
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors agree, ClinVar conflicts 7
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
-
STS p.Arg372Gln
Conflicting
Single submitter
Inborn genetic diseases
- STS p.Arg372Trp Conflicting Single submitter
-
STS p.Arg81Trp
Conflicting
Single submitter
recessive X-linked ichthyosis
-
STS p.Gln384His
Conflicting
Single submitter
Inborn genetic diseases
-
STS p.Gly33Ser
Conflicting
Single submitter
Inborn genetic diseases
-
STS p.Pro68Leu
Conflicting
Single submitter
STS-related disorder
-
STS p.Ser336Leu
Conflicting
Single submitter
recessive X-linked ichthyosis
Predictors lean, ClinVar uncertain 64
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
-
STS p.Arg381Ser
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
STS p.Asp397Asn
Uncertain significance
Multiple submitters
Inborn genetic diseases
-
STS p.Ala295Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Ala529Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg179Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg233Pro
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg269Gln
Uncertain significance
Single submitter
recessive X-linked ichthyosis
- STS p.Arg378Pro Uncertain significance Single submitter
-
STS p.Arg419His
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg517Gln
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg93His
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asn152Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asn199Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asn365Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asn446Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asn467Asp
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asn508Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Asp329Asn Uncertain significance Single submitter
-
STS p.Asp397His
Uncertain significance
Single submitter
recessive X-linked ichthyosis
-
STS p.Asp413Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asp499Asn
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Asp503Glu
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Cys136Arg
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Gln248Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Gln453His
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Glu244Lys
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Gly128Glu Uncertain significance Single submitter
-
STS p.Gly168Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Gly304Arg Uncertain significance Single submitter
- STS p.Gly362Glu Uncertain significance Single submitter
- STS p.Gly369Ala Uncertain significance Single submitter
- STS p.Gly369Arg Uncertain significance Single submitter
-
STS p.Gly370Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Gly562Ser
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Gly56Val
Uncertain significance
Single submitter
recessive X-linked ichthyosis
- STS p.Gly57Glu Uncertain significance Single submitter
- STS p.His205Arg Uncertain significance Single submitter
-
STS p.His434Tyr
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Ile371Val
Uncertain significance
Single submitter
recessive X-linked ichthyosis
-
STS p.Ile45Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Ile50Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Leu203Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Leu215Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Leu331Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Leu98Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Lys404Met
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Met396Thr
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Phe212Ser Uncertain significance Single submitter
-
STS p.Phe498Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Pro146Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Pro22Leu Uncertain significance Single submitter
- STS p.Pro249Leu Uncertain significance Single submitter
-
STS p.Pro37Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Pro512Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Ser138Asn Uncertain significance Single submitter
- STS p.Ser73Arg Uncertain significance Single submitter
-
STS p.Thr108Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Thr140Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Thr47Ile Uncertain significance Single submitter
-
STS p.Thr561Ile
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Trp367Cys Uncertain significance Single submitter
-
STS p.Trp367Ser
Uncertain significance
Single submitter
recessive X-linked ichthyosis
-
STS p.Val261Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Val84Ile
Uncertain significance
Single submitter
Inborn genetic diseases
Predictors split 27
The independent predictors disagree with each other — read with care.
- STS p.Arg269Trp Conflicting Single submitter
-
STS p.Arg325Ile
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg378His
Conflicting
Single submitter
Inborn genetic diseases
-
STS p.Arg419Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg431Cys
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Arg517Trp
Conflicting
Single submitter
Inborn genetic diseases
- STS p.Arg52Trp Benign Single submitter
-
STS p.Asn152Tyr
Uncertain significance
Single submitter
recessive X-linked ichthyosis
-
STS p.Asn254Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Asn442Ser Uncertain significance Single submitter
- STS p.Asp164Gly Uncertain significance Single submitter
- STS p.Asp322Asn Benign Single submitter
-
STS p.Asp322His
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Cys557Tyr Uncertain significance Single submitter
-
STS p.Gly121Ser
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Gly375Ala Benign Single submitter
- STS p.Gly386Ala Benign Single submitter
-
STS p.Ile34Thr
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Ile371Met
Likely benign
Single submitter
Inborn genetic diseases
- STS p.Met78Val Likely benign Single submitter
-
STS p.Met88Val
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Pro274Leu
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Pro411Ala
Uncertain significance
Single submitter
Inborn genetic diseases
-
STS p.Pro466Ala
Uncertain significance
Single submitter
Inborn genetic diseases
- STS p.Ser171Arg Uncertain significance Single submitter
- STS p.Ser394Thr Uncertain significance Single submitter
-
STS p.Tyr155Cys
Uncertain significance
Single submitter
Inborn genetic diseases
All STS variants
Pathogenic 7
- c.806+1G>A Single submitter recessive X-linked ichthyosis
- p.Gly57Ter Single submitter
- p.Trp91Ter Single submitter recessive X-linked ichthyosis
- c.1241+1G>T No assertion criteria recessive X-linked ichthyosis
- p.Cys441Tyr No assertion criteria recessive X-linked ichthyosis
- p.His439Arg No assertion criteria recessive X-linked ichthyosis
- p.Trp367Arg No assertion criteria recessive X-linked ichthyosis
Likely pathogenic 13
- p.Gly354Arg Multiple submitters recessive X-linked ichthyosis
- c.1241+1G>C Single submitter recessive X-linked ichthyosis
- p.Arg21fs Single submitter
- p.Arg449His Single submitter STS-related disorder
- p.Gly128Arg Single submitter recessive X-linked ichthyosis
- p.Gly354Ter Single submitter STS-related disorder
- p.Gly370Ala Single submitter
- p.Gly370Cys Single submitter recessive X-linked ichthyosis
- p.His131Tyr Single submitter STS-related disorder
- p.Leu159fs Single submitter STS-related disorder
- p.Leu53fs Single submitter STS-related disorder
- p.Phe212fs Single submitter STS-related disorder
- p.Pro146fs Single submitter recessive X-linked ichthyosis
Conflicting classifications of pathogenicity 11
- c.943+5G>A Single submitter Inborn genetic diseases
- p.Arg269Trp Single submitter ⚠
- p.Arg372Gln Single submitter Inborn genetic diseases ⚠
- p.Arg372Trp Single submitter ⚠
- p.Arg378His Single submitter Inborn genetic diseases ⚠
- p.Arg517Trp Single submitter Inborn genetic diseases ⚠
- p.Arg81Trp Single submitter recessive X-linked ichthyosis ⚠
- p.Gln384His Single submitter Inborn genetic diseases ⚠
- p.Gly33Ser Single submitter Inborn genetic diseases ⚠
- p.Pro68Leu Single submitter STS-related disorder ⚠
- p.Ser336Leu Single submitter recessive X-linked ichthyosis ⚠
Benign 31
- c.1082-76G>A Multiple submitters
- c.1241+15G>C Multiple submitters
- c.806+165G>A Multiple submitters
- p.Leu522= Multiple submitters
- p.Val302Ile Multiple submitters
- c.1082-246G>C Single submitter
- c.1363+286G>A Single submitter
- c.1363+289G>A Single submitter
- c.382+241TG[6] Single submitter
- c.806+214C>T Single submitter
- c.806+244T>C Single submitter
- c.807-5dup Single submitter
- c.-4-312C>G Single submitter
- c.-5+28189C>T Single submitter
- c.-5+28685G>A Single submitter
- p.Ala114Val Single submitter
- p.Arg46= Single submitter
- p.Arg52Trp Single submitter ⚠
- p.Asp322Asn Single submitter ⚠
- p.Asp413Gly Single submitter
- p.Glu169Gly Single submitter
- p.Gly353= Single submitter
- p.Gly375Ala Single submitter ⚠
- p.Gly386Ala Single submitter ⚠
- p.His205= Single submitter
- p.His283= Single submitter
- p.His492= Single submitter
- p.Ile3Phe Single submitter
- p.Ser213Gly Single submitter
- p.Tyr243= Single submitter
- p.Tyr252Phe Single submitter
Benign/Likely benign 8
- c.259+8_259+10del Multiple submitters recessive X-linked ichthyosis
- c.383-16C>T Multiple submitters recessive X-linked ichthyosis
- c.944-10T>C Multiple submitters
- p.Ala18Thr Multiple submitters
- p.Arg578His Multiple submitters Inborn genetic diseases
- p.Lys404Asn Multiple submitters
- p.Ser577Arg Multiple submitters
- p.Val96= Multiple submitters
Likely benign 37
- c.1082-55C>T Multiple submitters
- c.138-9T>G Multiple submitters
- c.1082-11del Single submitter
- c.1082-127C>A Single submitter
- c.1082-259G>A Single submitter
- c.1241+20G>C Single submitter
- c.1363+37G>A Single submitter
- c.382+214TG[8] Single submitter
- c.807-4G>T Single submitter
- c.807-6_807-5del Single submitter
- c.807-6_807-5dup Single submitter
- c.807-9_807-5del Single submitter
- c.-4-11G>A Single submitter
- c.-5+28689A>G Single submitter
- p.Ala14= Single submitter
- p.Ala263= Single submitter
- p.Ala264= Single submitter
- p.Ala403= Single submitter
- p.Ala408= Single submitter
- p.Arg431His Single submitter Inborn genetic diseases
- p.Asp109Asn Single submitter Inborn genetic diseases
- p.Asp541Asn Single submitter Inborn genetic diseases
- p.Gly56= Single submitter
- p.His17= Single submitter
- p.Ile371Met Single submitter Inborn genetic diseases ⚠
- p.Ile50= Single submitter
- p.Leu563= Single submitter
- p.Leu69= Single submitter
- p.Met525Ile Single submitter Inborn genetic diseases
- p.Met78Val Single submitter ⚠
- p.Phe485= Single submitter
- p.Pro184= Single submitter
- p.Pro274= Single submitter
- p.Pro37= Single submitter
- p.Tyr303= Single submitter
- p.Val261Ala Single submitter Inborn genetic diseases
- p.Val261Met Single submitter Inborn genetic diseases
Uncertain significance 87
- p.Arg381Ser Multiple submitters Inborn genetic diseases ⚠
- p.Asp397Asn Multiple submitters Inborn genetic diseases ⚠
- c.1082-18T>C Single submitter recessive X-linked ichthyosis
- p.Ala295Val Single submitter Inborn genetic diseases ⚠
- p.Ala529Val Single submitter Inborn genetic diseases ⚠
- p.Arg179Ser Single submitter Inborn genetic diseases ⚠
- p.Arg233Pro Single submitter Inborn genetic diseases ⚠
- p.Arg269Gln Single submitter recessive X-linked ichthyosis ⚠
- p.Arg325Ile Single submitter Inborn genetic diseases ⚠
- p.Arg378Pro Single submitter ⚠
- p.Arg419Cys Single submitter Inborn genetic diseases ⚠
- p.Arg419His Single submitter Inborn genetic diseases ⚠
- p.Arg431Cys Single submitter Inborn genetic diseases ⚠
- p.Arg517Gln Single submitter Inborn genetic diseases ⚠
- p.Arg93Cys Single submitter Inborn genetic diseases
- p.Arg93His Single submitter Inborn genetic diseases ⚠
- p.Asn152Ser Single submitter Inborn genetic diseases ⚠
- p.Asn152Tyr Single submitter recessive X-linked ichthyosis ⚠
- p.Asn199Ser Single submitter Inborn genetic diseases ⚠
- p.Asn254Ser Single submitter Inborn genetic diseases ⚠
- p.Asn365Thr Single submitter Inborn genetic diseases ⚠
- p.Asn442Ser Single submitter ⚠
- p.Asn446Ser Single submitter Inborn genetic diseases ⚠
- p.Asn467Asp Single submitter Inborn genetic diseases ⚠
- p.Asn508Thr Single submitter Inborn genetic diseases ⚠
- p.Asp164Gly Single submitter ⚠
- p.Asp322His Single submitter Inborn genetic diseases ⚠
- p.Asp329Asn Single submitter ⚠
- p.Asp397His Single submitter recessive X-linked ichthyosis ⚠
- p.Asp413Asn Single submitter Inborn genetic diseases ⚠
- p.Asp499Asn Single submitter Inborn genetic diseases ⚠
- p.Asp503Glu Single submitter Inborn genetic diseases ⚠
- p.Cys136Arg Single submitter Inborn genetic diseases ⚠
- p.Cys557Tyr Single submitter ⚠
- p.Gln248Leu Single submitter Inborn genetic diseases ⚠
- p.Gln453His Single submitter Inborn genetic diseases ⚠
- p.Glu244Lys Single submitter Inborn genetic diseases ⚠
- p.Gly121Ser Single submitter Inborn genetic diseases ⚠
- p.Gly128Glu Single submitter ⚠
- p.Gly168Ala Single submitter Inborn genetic diseases ⚠
- p.Gly304Arg Single submitter ⚠
- p.Gly362Glu Single submitter ⚠
- p.Gly369Ala Single submitter ⚠
- p.Gly369Arg Single submitter ⚠
- p.Gly370Val Single submitter Inborn genetic diseases ⚠
- p.Gly562Ser Single submitter Inborn genetic diseases ⚠
- p.Gly56Val Single submitter recessive X-linked ichthyosis ⚠
- p.Gly57Glu Single submitter ⚠
- p.His205Arg Single submitter ⚠
- p.His434Tyr Single submitter Inborn genetic diseases ⚠
- p.Ile34Thr Single submitter Inborn genetic diseases ⚠
- p.Ile371Val Single submitter recessive X-linked ichthyosis ⚠
- p.Ile45Met Single submitter Inborn genetic diseases ⚠
- p.Ile50Leu Single submitter Inborn genetic diseases ⚠
- p.Leu203Ile Single submitter Inborn genetic diseases ⚠
- p.Leu215Ile Single submitter Inborn genetic diseases ⚠
- p.Leu331Val Single submitter Inborn genetic diseases ⚠
- p.Leu98Val Single submitter Inborn genetic diseases ⚠
- p.Lys404Met Single submitter Inborn genetic diseases ⚠
- p.Met396Thr Single submitter Inborn genetic diseases ⚠
- p.Met525Thr Single submitter
- p.Met88Val Single submitter Inborn genetic diseases ⚠
- p.Phe212Ser Single submitter ⚠
- p.Phe464= Single submitter
- p.Phe498Leu Single submitter Inborn genetic diseases ⚠
- p.Pro146Ala Single submitter Inborn genetic diseases ⚠
- p.Pro22Leu Single submitter ⚠
- p.Pro249Leu Single submitter ⚠
- p.Pro274Leu Single submitter Inborn genetic diseases ⚠
- p.Pro37Ala Single submitter Inborn genetic diseases ⚠
- p.Pro411Ala Single submitter Inborn genetic diseases ⚠
- p.Pro466Ala Single submitter Inborn genetic diseases ⚠
- p.Pro512Ser Single submitter Inborn genetic diseases ⚠
- p.Ser138Asn Single submitter ⚠
- p.Ser171Arg Single submitter ⚠
- p.Ser394Thr Single submitter ⚠
- p.Ser73Arg Single submitter ⚠
- p.Thr108Ala Single submitter Inborn genetic diseases ⚠
- p.Thr140Ile Single submitter Inborn genetic diseases ⚠
- p.Thr194_Leu195del Single submitter
- p.Thr47Ile Single submitter ⚠
- p.Thr561Ile Single submitter Inborn genetic diseases ⚠
- p.Trp367Cys Single submitter ⚠
- p.Trp367Ser Single submitter recessive X-linked ichthyosis ⚠
- p.Tyr155Cys Single submitter Inborn genetic diseases ⚠
- p.Val261Leu Single submitter Inborn genetic diseases ⚠
- p.Val84Ile Single submitter Inborn genetic diseases ⚠