TPRKB — 67 ClinVar variants
All ClinVar germline TPRKB variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 37 flagged for review →
1 Pathogenic · 1 Likely pathogenic · 2 Conflicting · 6 Benign · 2 Benign/Likely benign · 11 Likely benign · 44 Uncertain significance
Full TPRKB gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions⚑ Evidence disagreements 37
Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.
Predictors vs ClinVar 1
ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.
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TPRKB p.Tyr149Cys
Pathogenic
No assertion criteria
Galloway-Mowat syndrome 5
Predictors agree, ClinVar conflicts 2
ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.
Predictors lean, ClinVar uncertain 26
ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.
- TPRKB p.Arg14Thr Uncertain significance Multiple submitters
- TPRKB p.Asn88Ser Uncertain significance Multiple submitters
- TPRKB p.Glu12Lys Uncertain significance Multiple submitters
- TPRKB p.Ile110Val Uncertain significance Multiple submitters
- TPRKB p.Ile54Val Uncertain significance Multiple submitters
- TPRKB p.Val108Leu Uncertain significance Multiple submitters
- TPRKB p.Val49Ile Uncertain significance Multiple submitters
- TPRKB p.Ala26Thr Uncertain significance Single submitter
- TPRKB p.Ala26Val Uncertain significance Single submitter
- TPRKB p.Arg168Thr Uncertain significance Single submitter
- TPRKB p.Gln154Arg Uncertain significance Single submitter
- TPRKB p.Gln2His Uncertain significance Single submitter
- TPRKB p.Glu155Lys Uncertain significance Single submitter
- TPRKB p.His5Gln Uncertain significance Single submitter
- TPRKB p.Ile123Met Uncertain significance Single submitter
- TPRKB p.Ile123Thr Uncertain significance Single submitter
- TPRKB p.Leu151Pro Uncertain significance Single submitter
- TPRKB p.Leu161Phe Uncertain significance Single submitter
- TPRKB p.Leu17Pro Uncertain significance Single submitter
- TPRKB p.Leu29Trp Uncertain significance Single submitter
- TPRKB p.Lys71Arg Uncertain significance Single submitter
- TPRKB p.Met34Leu Uncertain significance Single submitter
- TPRKB p.Met34Val Uncertain significance Single submitter
- TPRKB p.Phe96Ile Uncertain significance Single submitter
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TPRKB p.Ser99Ala
Uncertain significance
Single submitter
Galloway-Mowat syndrome 5
- TPRKB p.Thr46Ala Uncertain significance Single submitter
Predictors split 8
The independent predictors disagree with each other — read with care.
- TPRKB p.Ala61Gly Uncertain significance Single submitter
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TPRKB p.Asp50Tyr
Uncertain significance
Single submitter
TPRKB-related disorder
- TPRKB p.Gly36Asp Uncertain significance Single submitter
- TPRKB p.Ile110Thr Uncertain significance Single submitter
- TPRKB p.Leu136Val Uncertain significance Single submitter
- TPRKB p.Leu83Val Uncertain significance Single submitter
- TPRKB p.Phe96Leu Uncertain significance Single submitter
- TPRKB p.Thr74Ala Uncertain significance Single submitter
All TPRKB variants
Pathogenic 1
- p.Tyr149Cys No assertion criteria Galloway-Mowat syndrome 5 ⚠
Likely pathogenic 1
- p.Tyr149Asn Single submitter Galloway-Mowat syndrome 5
Conflicting classifications of pathogenicity 2
- p.Asn82Ser Single submitter ⚠
- p.Leu136Pro No assertion criteria nephrotic syndrome ⚠
Benign 6
- c.442-71A>T Multiple submitters
- p.Ile158= Multiple submitters Galloway-Mowat syndrome 5
- c.142-348G>A Single submitter
- c.265-8del Single submitter
- p.Glu138Gly Single submitter
- c.142-423dup No assertion criteria
Benign/Likely benign 2
- c.265-18dup Multiple submitters
- p.Gln130= Multiple submitters Galloway-Mowat syndrome 5
Likely benign 11
- c.142-365G>T Single submitter
- c.142-424_142-423dup Single submitter
- c.441+13A>C Single submitter
- p.Asn135= Single submitter
- p.Gln125Glu Single submitter
- p.Leu161= Single submitter
- p.Leu93= Single submitter
- p.Ser41= Single submitter
- c.-9_-7dup No assertion criteria TPRKB-related disorder
- p.Leu151= No assertion criteria TPRKB-related disorder
- p.Tyr109= No assertion criteria TPRKB-related disorder
Uncertain significance 44
- p.Ala92Thr Multiple submitters
- p.Arg14Thr Multiple submitters ⚠
- p.Arg31del Multiple submitters Galloway-Mowat syndrome 5
- p.Asn88Ser Multiple submitters ⚠
- p.Glu12Lys Multiple submitters ⚠
- p.Ile110Val Multiple submitters ⚠
- p.Ile54Val Multiple submitters ⚠
- p.Met140fs Multiple submitters
- p.Tyr149His Multiple submitters Galloway-Mowat syndrome 5
- p.Val108Leu Multiple submitters ⚠
- p.Val49Ile Multiple submitters ⚠
- p.Ala26Thr Single submitter ⚠
- p.Ala26Val Single submitter ⚠
- p.Ala61Gly Single submitter ⚠
- p.Arg168Thr Single submitter ⚠
- p.Asn88fs Single submitter
- p.Asp50Tyr Single submitter TPRKB-related disorder ⚠
- p.Gln154Arg Single submitter ⚠
- p.Gln2His Single submitter ⚠
- p.Glu155Lys Single submitter ⚠
- p.Gly36Asp Single submitter ⚠
- p.Gly36Val Single submitter
- p.His5Gln Single submitter ⚠
- p.Ile110Thr Single submitter ⚠
- p.Ile123Met Single submitter ⚠
- p.Ile123Thr Single submitter ⚠
- p.Leu136Val Single submitter ⚠
- p.Leu151Pro Single submitter ⚠
- p.Leu161Phe Single submitter ⚠
- p.Leu17Pro Single submitter ⚠
- p.Leu29Trp Single submitter ⚠
- p.Leu83Val Single submitter ⚠
- p.Lys115_Gln116insTer Single submitter
- p.Lys150fs Single submitter
- p.Lys71Arg Single submitter ⚠
- p.Met34Leu Single submitter ⚠
- p.Met34Val Single submitter ⚠
- p.Phe96Ile Single submitter ⚠
- p.Phe96Leu Single submitter ⚠
- p.Ser152fs Single submitter
- p.Ser99Ala Single submitter Galloway-Mowat syndrome 5 ⚠
- p.Thr46Ala Single submitter ⚠
- p.Thr74Ala Single submitter ⚠
- p.Val56Gly Single submitter