TRPM1 — 1416 ClinVar variants

All ClinVar germline TRPM1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 588 flagged for review →

46 Pathogenic · 22 Pathogenic/Likely pathogenic · 46 Likely pathogenic · 102 Conflicting · 88 Benign · 26 Benign/Likely benign · 446 Likely benign · 640 Uncertain significance

Full TRPM1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 588

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 35

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 420

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 420

Predictors split 132

The independent predictors disagree with each other — read with care.

All TRPM1 variants

Pathogenic 46

Pathogenic/Likely pathogenic 22

  • c.1089+3_1089+6del Multiple submitters TRPM1-related disorder
  • c.2316+1G>A Multiple submitters TRPM1-related disorder
  • c.3127+1G>A Multiple submitters inherited retinal dystrophy
  • c.3148+1G>A Multiple submitters TRPM1-related disorder
  • c.618+3_618+6del Multiple submitters TRPM1-related disorder
  • p.Ala848Val Multiple submitters TRPM1-related disorder
  • p.Arg1022Ter Multiple submitters TRPM1-related disorder
  • p.Arg249Ter Multiple submitters TRPM1-related disorder
  • p.Arg646Cys Multiple submitters TRPM1-related disorder
  • p.Arg656Ter Multiple submitters congenital stationary night blindness 1C
  • p.Arg899Ter Multiple submitters TRPM1-related disorder
  • p.Arg950Gln Multiple submitters TRPM1-related disorder
  • p.Asp113fs Multiple submitters TRPM1-related disorder
  • p.Gly161fs Multiple submitters TRPM1-related disorder
  • p.Lys457Ter Multiple submitters TRPM1-related disorder
  • p.Met718fs Multiple submitters TRPM1-related disorder
  • p.Trp1072fs Multiple submitters TRPM1-related disorder
  • p.Trp878Ter Multiple submitters congenital stationary night blindness 1C
  • p.Tyr1057Ter Multiple submitters TRPM1-related disorder
  • p.Tyr522Ter Multiple submitters TRPM1-related disorder
  • p.Tyr94Cys Multiple submitters TRPM1-related disorder
  • p.Val1036fs Multiple submitters TRPM1-related disorder

Likely pathogenic 46

Conflicting classifications of pathogenicity 102

Benign 88

Benign/Likely benign 26

  • c.1263+10dup Multiple submitters
  • c.1263+19G>A Multiple submitters
  • c.1573-10T>C Multiple submitters congenital stationary night blindness 1C
  • c.2316+11C>T Multiple submitters congenital stationary night blindness 1C
  • c.2316+12G>A Multiple submitters congenital stationary night blindness 1C
  • c.3293+7G>A Multiple submitters
  • p.Ala717Pro Multiple submitters congenital stationary night blindness 1C
  • p.Arg1327His Multiple submitters congenital stationary night blindness 1C
  • p.Arg1444Cys Multiple submitters congenital stationary night blindness 1C
  • p.Arg1501His Multiple submitters congenital stationary night blindness 1C
  • p.Glu1303Lys Multiple submitters congenital stationary night blindness 1C
  • p.Gly243= Multiple submitters congenital stationary night blindness 1C
  • p.Gly459Val Multiple submitters
  • p.Gly86= Multiple submitters
  • p.Gly877= Multiple submitters congenital stationary night blindness 1C
  • p.Ile195= Multiple submitters
  • p.Leu996= Multiple submitters
  • p.Lys205= Multiple submitters congenital stationary night blindness 1C
  • p.Pro421Thr Multiple submitters congenital stationary night blindness 1C
  • p.Pro429Thr Multiple submitters congenital stationary night blindness 1C
  • p.Pro516= Multiple submitters
  • p.Thr1313Met Multiple submitters congenital stationary night blindness 1C
  • p.Tyr78= Multiple submitters congenital stationary night blindness 1C
  • p.Val1582Met Multiple submitters congenital stationary night blindness 1C
  • p.Val1604= Multiple submitters congenital stationary night blindness 1C
  • p.Val997= Multiple submitters congenital stationary night blindness 1C

Likely benign 446

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 640

Showing the top 300 by review status; the full set is in the sitemap.