WT1 — 1309 ClinVar variants

All ClinVar germline WT1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 5 flagged for review →

63 Pathogenic · 12 Pathogenic/Likely pathogenic · 55 Likely pathogenic · 98 Conflicting · 30 Benign · 19 Benign/Likely benign · 404 Likely benign · 628 Uncertain significance

Full WT1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 5

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predicted LoF vs a conflicting call 5

ClinVar submitters conflict, and it's a predicted loss-of-function change in a gene where LoF causes disease — flagged for review, not resolved (verify NMD-escape for C-terminal truncations). Non-missense.

All WT1 variants

Pathogenic 63

Pathogenic/Likely pathogenic 12

Likely pathogenic 55

Conflicting classifications of pathogenicity 98

Benign 30

Benign/Likely benign 19

  • c.1114-9T>C Multiple submitters Frasier syndrome
  • c.1448-10G>A Multiple submitters Wilms tumor 1
  • c.785-20G>T Multiple submitters Meacham syndrome
  • c.887+14G>A Multiple submitters nephrotic syndrome, type 4
  • c.887+16G>A Multiple submitters Meacham syndrome
  • c.*1132A>T Multiple submitters Meacham syndrome
  • c.*16G>T Multiple submitters nephrotic syndrome, type 4
  • c.*835A>G Multiple submitters nephrotic syndrome, type 4
  • p.Arg61= Multiple submitters Frasier syndrome
  • p.Glu263= Multiple submitters Frasier syndrome
  • p.Pro254Thr Multiple submitters Denys-Drash syndrome
  • p.Ser285Asn Multiple submitters Denys-Drash syndrome
  • c.*1098C>T Single submitter nephrotic syndrome, type 4
  • c.*1209A>G Single submitter nephrotic syndrome, type 4
  • c.*1239T>A Single submitter nephrotic syndrome, type 4
  • c.*345G>A Single submitter Meacham syndrome
  • c.*864T>A Single submitter Meacham syndrome
  • c.*864T>G Single submitter Meacham syndrome
  • c.*903G>A Single submitter Meacham syndrome

Likely benign 404

Showing the top 300 by review status; the full set is in the sitemap.

Uncertain significance 628

Showing the top 300 by review status; the full set is in the sitemap.