KRT83 p.Asp368=
c.1104T>C · rs2121338701 · VCV1616812
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Absent
absent from gnomAD v4.1
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -13 | GERP -3.8 |
| Overall | ||
| CADD | 0.103 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- KRT83
- Protein
- p.Asp368=
- Coding
- c.1104T>C
- MANE Select
- NM_002282
- dbSNP
- rs2121338701
- Type
- single nucleotide variant
- Location
- chr12:52316051 (GRCh38)
- Gene constraint
- LOEUF 1.226 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 74.81
- Residue 368
- the if rod domain; the 'coil 2' region
Similar variants
- KRT83 p.Glu407Lys Likely pathogenic ★★ same type
- KRT83 p.Arg130Cys Uncertain significance ★★ ⚠ same type
- KRT83 p.Arg168Trp Uncertain significance ★★ ⚠ same type
- KRT83 p.Arg272Gln Uncertain significance ★★ ⚠ same type
- KRT83 p.Arg272Trp Uncertain significance ★★ ⚠ same type
- KRT83 p.Arg293His Uncertain significance ★★ ⚠ same type
- KRT83 p.Arg321Cys Uncertain significance ★★ ⚠ same type
- KRT83 p.Arg321His Uncertain significance ★★ ⚠ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/krt83-p-asp368 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown