MAP3K7 p.Ile496fs
c.1485dup · VCV4893430
Uncertain significance
Single submitter
Classification
Uncertain significance
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
Consequence
frameshift
predicted LoF
gnomAD v4.1
Rare
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function in a LoF-intolerant gene |
|---|---|---|
| NMD | predicted | premature termination codon in exon 15 of 17 |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 7.9 | GERP 1.9, phastCons 1 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Variant & gene context
- Gene
- MAP3K7
- Protein
- p.Ile496fs
- Coding
- c.1485dup
- MANE Select
- NM_145331
- Type
- Duplication
- Location
- chr6:90519296 (GRCh38)
- Gene constraint
- LOEUF 0.397 · pLI 1.00 (gnomAD)
- Structure
- AlphaFold pLDDT 70.27 · 25 PDB
Similar variants
- MAP3K7 c.483-15dup Benign ★★ same type
- MAP3K7 c.608-14dup Benign/Likely benign ★★ same type
- MAP3K7 p.Lys209dup Likely pathogenic ★ same type
- MAP3K7 p.Tyr300fs Uncertain significance ★ same type
- MAP3K7 p.Tyr33fs Uncertain significance ★ same type
- MAP3K7 c.121-20dup Benign ★ same type
- MAP3K7 c.1640+10_1640+16dup Likely benign ★ same type
- MAP3K7 c.483-15_483-14dup Benign ★ same type
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/map3k7-p-ile496fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown