PKP2 p.Val321=
c.963C>G · rs202207343 · VCV2029635
Likely benign
Multiple submitters
Classification
Likely benign
ClinVar
Review
Multiple submitters ★★☆☆
ClinVar · 2 submitters
gnomAD v4.1
Absent
absent from gnomAD v4.1
Conditions
2
cardiomyopathy
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP -8.4 | |
| Overall | ||
| CADD | 0.05 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
Absent from gnomAD v4.1. Not observed in any sequenced alleles — a rarity signal (ACMG PM2-supporting), not evidence of pathogenicity on its own.
Variant & gene context
- Gene
- PKP2
- Protein
- p.Val321=
- Coding
- c.963C>G
- MANE Select
- NM_001005242
- dbSNP
- rs202207343
- Type
- single nucleotide variant
- Location
- chr12:32877917 (GRCh38)
- Gene constraint
- LOEUF 1.105 · pLI <0.01 · ClinGen HI 3/3 (gnomAD)
- Structure
- AlphaFold pLDDT 64.32 · 1 PDB
- Residue 321
- the 'required for interaction with influenza a virus rna polymerase subunit pb1' region; a UniProt-annotated variant site (in arvd9; uncertain significance); the 'required for binding to single-stranded dna' region
Similar variants
- PKP2 p.Val321fs Pathogenic/Likely pathogenic ★★ same residue
- PKP2 c.1034+1G>C Likely pathogenic ★★ same condition
- PKP2 c.1034+1G>T Likely pathogenic ★★ same condition
- PKP2 c.1035-2A>G Likely pathogenic ★★ same condition
- PKP2 c.1170+1G>A Pathogenic/Likely pathogenic ★★ same condition
- PKP2 c.1170+1G>C Pathogenic ★★ same condition
- PKP2 c.1170+2T>A Pathogenic/Likely pathogenic ★★ same condition
- PKP2 c.1171-2A>G Pathogenic/Likely pathogenic ★★ same condition
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/pkp2-p-val321 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown