PRPH2 p.Arg48fs
c.141_222del · rs2152011045 · VCV1351097
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Consequence | frameshift | predicted loss-of-function |
|---|---|---|
| NMD | predicted | premature termination codon in exon 1 of 3 |
| Splicing | ||
| SpliceAI | — | not assessed · substitutions only |
| Constraint at this position | ||
| Conservation | phyloP 5.1 | GERP 1.7, phastCons 1 |
Predicted loss-of-function is descriptive, not an applied PVS1 code.
Population frequency
No gnomAD frequency available for this variant. This is missing data, not an absence: the variant may or may not be present in gnomAD. Rarity (ACMG PM2) and BA1/BS1 cannot be assessed for it.
Variant & gene context
- Gene
- PRPH2
- Protein
- p.Arg48fs
- Coding
- c.141_222del
- MANE Select
- NM_000322
- dbSNP
- rs2152011045
- Type
- Deletion
- Location
- chr6:42722113 (GRCh38)
- Gene constraint
- LOEUF 0.773 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 87.56 · 1 PDB
Similar variants
- PRPH2 p.Asn136fs Pathogenic/Likely pathogenic ★★ same condition
- PRPH2 p.Asp50fs Pathogenic/Likely pathogenic ★★ same condition
- PRPH2 p.Asp87fs Pathogenic ★★ same condition
- PRPH2 p.Gln132fs Pathogenic ★★ same condition
- PRPH2 p.Gly38fs Pathogenic ★★ same condition
- PRPH2 p.Leu290fs Pathogenic ★★ same condition
- PRPH2 p.Leu307fs Pathogenic ★★ same condition
- PRPH2 p.Lys193fs Pathogenic ★★ same condition
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/prph2-p-arg48fs (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown