PRPH2 — 823 ClinVar variants

All ClinVar germline PRPH2 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more.

173 Pathogenic · 69 Pathogenic/Likely pathogenic · 94 Likely pathogenic · 76 Conflicting · 37 Benign · 10 Benign/Likely benign · 90 Likely benign · 274 Uncertain significance

Full PRPH2 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

All PRPH2 variants

Pathogenic 173

Pathogenic/Likely pathogenic 69

  • c.582-1G>A Multiple submitters PRPH2-related disorder
  • c.828+2T>C Multiple submitters PRPH2-related disorder
  • p.Arg142Trp Multiple submitters PRPH2-related disorder
  • p.Arg172Gln Multiple submitters vitelliform macular dystrophy 3
  • p.Arg172Trp Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Arg195Gln Multiple submitters cone-rod dystrophy
  • p.Arg195Ter Multiple submitters patterned macular dystrophy 1
  • p.Arg203_Gly208del Multiple submitters patterned macular dystrophy 1
  • p.Arg220Gln Multiple submitters PRPH2-related disorder
  • p.Arg220Pro Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Arg46Ter Multiple submitters PRPH2-related disorder
  • p.Asn136fs Multiple submitters PRPH2-related disorder
  • p.Asn199fs Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Asn215His Multiple submitters PRPH2-related disorder
  • p.Asn215Tyr Multiple submitters PRPH2-related disorder
  • p.Asp157Asn Multiple submitters PRPH2-related disorder
  • p.Asp173Ala Multiple submitters PRPH2-related disorder
  • p.Asp186Asn Multiple submitters PRPH2-related disorder
  • p.Asp50fs Multiple submitters PRPH2-related disorder
  • p.Cys213Phe Multiple submitters PRPH2-related disorder
  • p.Cys213Ser Multiple submitters PRPH2-related disorder
  • p.Cys213Tyr Multiple submitters PRPH2-related disorder
  • p.Cys214Ter Multiple submitters PRPH2-related disorder
  • p.Cys222Arg Multiple submitters inherited retinal dystrophy
  • p.Cys250Phe Multiple submitters PRPH2-related disorder
  • p.Cys82Ter Multiple submitters Stargardt disease
  • p.Glu302Ter Multiple submitters vitelliform macular dystrophy 3
  • p.Gly137Asp Multiple submitters PRPH2-related disorder
  • p.Gly167Asp Multiple submitters PRPH2-related disorder
  • p.Gly167Ser Multiple submitters PRPH2-related disorder
  • p.Gly202Glu Multiple submitters PRPH2-related disorder
  • p.Gly266Asp Multiple submitters PRPH2-related disorder
  • p.Leu107fs Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Leu130Pro Multiple submitters PRPH2-related disorder
  • p.Leu185Pro Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Leu254Gln Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Lys153Arg Multiple submitters PRPH2-related disorder
  • p.Lys197Glu Multiple submitters PRPH2-related disorder
  • p.Met1Thr Multiple submitters PRPH2-related disorder
  • p.Phe211fs Multiple submitters PRPH2-related disorder
  • p.Phe211Leu Multiple submitters inherited retinal dystrophy
  • p.Pro210Arg Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Pro210Leu Multiple submitters PRPH2-related disorder
  • p.Pro210Ser Multiple submitters PRPH2-related disorder
  • p.Pro216Ala Multiple submitters PRPH2-related disorder
  • p.Pro216Arg Multiple submitters inherited retinal dystrophy
  • p.Pro216Ser Multiple submitters PRPH2-related disorder
  • p.Pro221Leu Multiple submitters inherited retinal dystrophy
  • p.Ser212Asn Multiple submitters PRPH2-related disorder
  • p.Ser212Gly Multiple submitters PRPH2-related disorder
  • p.Ser212Thr Multiple submitters PRPH2-related disorder
  • p.Ser218Ter Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Ser231Ter Multiple submitters retinitis pigmentosa 7
  • p.Ser322fs Multiple submitters PRPH2-related disorder
  • p.Trp174Ter Multiple submitters PRPH2-related disorder
  • p.Trp179Arg Multiple submitters PRPH2-related disorder
  • p.Trp179Cys Multiple submitters patterned dystrophy of the retinal pigment epithelium
  • p.Trp246Cys Multiple submitters retinitis pigmentosa 7
  • p.Trp97fs Multiple submitters PRPH2-related disorder
  • p.Trp97Ter Multiple submitters PRPH2-related disorder
  • p.Tyr141Cys Multiple submitters retinitis pigmentosa
  • p.Tyr141His Multiple submitters PRPH2-related disorder
  • p.Tyr204fs Multiple submitters patterned macular dystrophy 1
  • p.Tyr257Ter Multiple submitters PRPH2-related disorder
  • p.Val209Asp Multiple submitters PRPH2-related disorder
  • p.Val73fs Multiple submitters PRPH2-related disorder
  • p.Arg93fs No assertion criteria Macular dystrophy
  • p.Leu270fs No assertion criteria Macular dystrophy
  • p.Val209Phe No assertion criteria Macular dystrophy

Likely pathogenic 94

Conflicting classifications of pathogenicity 76

  • c.581+15G>A Single submitter PRPH2-related disorder
  • c.581+5G>A Single submitter PRPH2-related disorder
  • c.828+5G>A Single submitter PRPH2-related disorder
  • c.828+6C>T Single submitter PRPH2-related disorder
  • c.829-1G>A Single submitter PRPH2-related disorder
  • c.-60C>T Single submitter retinitis pigmentosa
  • c.*1079G>A Single submitter cone-rod dystrophy
  • c.*152G>A Single submitter fundus albipunctatus
  • c.*1565G>A Single submitter retinitis pigmentosa
  • c.*1687C>T Single submitter retinitis pigmentosa
  • c.*20C>T Single submitter adult-onset foveomacular vitelliform dystrophy
  • c.*509G>A Single submitter retinitis pigmentosa
  • c.*797G>A Single submitter choroidal dystrophy, central areolar 2
  • p.Ala116Ser Single submitter inherited retinal dystrophy
  • p.Ala232Thr Single submitter PRPH2-related disorder
  • p.Ala232Val Single submitter inherited retinal dystrophy
  • p.Ala339Thr Single submitter inherited retinal dystrophy
  • p.Arg123Trp Single submitter patterned macular dystrophy 1
  • p.Arg13Trp Single submitter PRPH2-related disorder
  • p.Arg142Gln Single submitter PRPH2-related disorder
  • p.Arg195Gly Single submitter PRPH2-related disorder
  • p.Arg195Pro Single submitter PRPH2-related disorder
  • p.Arg220Gly Single submitter PRPH2-related disorder
  • p.Arg220Trp Single submitter PRPH2-related disorder
  • p.Arg284= Single submitter retinitis pigmentosa
  • p.Arg284Cys Single submitter PRPH2-related disorder
  • p.Asp186Gly Single submitter PRPH2-related disorder
  • p.Asp207Gly Single submitter PRPH2-related disorder
  • p.Asp84= Single submitter adult-onset foveomacular vitelliform dystrophy
  • p.Cys165Phe Single submitter retinitis pigmentosa
  • p.Cys166Tyr Single submitter PRPH2-related disorder
  • p.Cys222Tyr Single submitter Stargardt disease
  • p.Gln178Arg Single submitter PRPH2-related disorder
  • p.Glu127Gly Single submitter cone-rod dystrophy
  • p.Glu242Gly Single submitter Usher syndrome
  • p.Glu309Asp Single submitter PRPH2-related disorder
  • p.Gly208Asp Single submitter PRPH2-related disorder
  • p.Gly249Ser Single submitter inherited retinal dystrophy
  • p.Gly305Asp Single submitter PRPH2-related disorder
  • p.Gly336= Single submitter adult-onset foveomacular vitelliform dystrophy
  • p.Ile104= Single submitter adult-onset foveomacular vitelliform dystrophy
  • p.Ile161Met Single submitter Stargardt disease
  • p.Ile32Val Single submitter PRPH2-related disorder
  • p.Leu159Arg Single submitter PRPH2-related disorder
  • p.Leu159Pro Single submitter PRPH2-related disorder
  • p.Leu261Phe Single submitter PRPH2-related disorder
  • p.Leu271del Single submitter vitelliform macular dystrophy 2
  • p.Leu41Pro Single submitter PRPH2-related disorder
  • p.Lys135Glu Single submitter PRPH2-related disorder
  • p.Lys153Glu Single submitter PRPH2-related disorder
  • p.Lys15Arg Single submitter patterned macular dystrophy 1
  • p.Lys190Glu Single submitter PRPH2-related disorder
  • p.Lys325fs Single submitter PRPH2-related disorder
  • p.Met152Val Single submitter inherited retinal dystrophy
  • p.Met1Val Single submitter inherited retinal dystrophy
  • p.Phe319Leu Single submitter retinitis pigmentosa
  • p.Pro219Arg Single submitter PRPH2-related disorder
  • p.Pro219Ser Single submitter PRPH2-related disorder
  • p.Pro296= Single submitter patterned macular dystrophy 1
  • p.Pro313Leu Single submitter PRPH2-related disorder
  • p.Ser125Leu Single submitter patterned macular dystrophy 1
  • p.Ser217Gly Single submitter patterned dystrophy of the retinal pigment epithelium
  • p.Ser218Leu Single submitter isolated macular dystrophy
  • p.Ser27Phe Single submitter PRPH2-related disorder
  • p.Ser289Leu Single submitter PRPH2-related disorder
  • p.Thr228Ile Single submitter PRPH2-related disorder
  • p.Tyr204His Single submitter patterned dystrophy of the retinal pigment epithelium
  • p.Tyr236= Single submitter retinitis pigmentosa
  • p.Tyr83= Single submitter PRPH2-related disorder
  • p.Tyr91Asn Single submitter patterned dystrophy of the retinal pigment epithelium
  • p.Val200Met Single submitter PRPH2-related disorder
  • p.Val267= Single submitter retinitis pigmentosa
  • p.Val268Ile Single submitter PRPH2-related disorder
  • p.Val277Gly Single submitter PRPH2-related disorder
  • p.Val332Glu Single submitter vitelliform macular dystrophy 3
  • p.Val332Met Single submitter PRPH2-related disorder

Benign 37

Benign/Likely benign 10

  • p.Ile161= Multiple submitters patterned macular dystrophy 1
  • p.Leu45Phe Multiple submitters PRPH2-related disorder
  • p.Ser303= Multiple submitters inherited retinal dystrophy
  • c.*1121A>C Single submitter retinitis pigmentosa
  • c.*1230C>T Single submitter retinitis pigmentosa
  • c.*1313G>A Single submitter retinitis pigmentosa
  • c.*1372C>A Single submitter cone-rod dystrophy
  • c.*1524G>C Single submitter choroidal dystrophy, central areolar 2
  • c.*1534T>C Single submitter retinitis pigmentosa
  • c.*989G>A Single submitter choroidal dystrophy, central areolar 2

Likely benign 90

  • c.582-14dup Multiple submitters PRPH2-related disorder
  • c.828+19G>C Multiple submitters PRPH2-related disorder
  • c.828+19G>T Multiple submitters PRPH2-related disorder
  • c.828+20G>A Multiple submitters PRPH2-related disorder
  • c.828+20G>C Multiple submitters PRPH2-related disorder
  • c.829-18C>T Multiple submitters PRPH2-related disorder
  • p.Ala2= Multiple submitters PRPH2-related disorder
  • p.Ala334= Multiple submitters PRPH2-related disorder
  • p.Arg220= Multiple submitters PRPH2-related disorder
  • p.Asn136= Multiple submitters PRPH2-related disorder
  • p.Asn169= Multiple submitters PRPH2-related disorder
  • p.Asn199= Multiple submitters PRPH2-related disorder
  • p.Asp338= Multiple submitters PRPH2-related disorder
  • p.Cys166= Multiple submitters PRPH2-related disorder
  • p.Ile156= Multiple submitters PRPH2-related disorder
  • p.Pro100= Multiple submitters PRPH2-related disorder
  • p.Pro210= Multiple submitters PRPH2-related disorder
  • p.Pro88= Multiple submitters PRPH2-related disorder
  • p.Ser125= Multiple submitters PRPH2-related disorder
  • p.Ser198= Multiple submitters PRPH2-related disorder
  • p.Ser301= Multiple submitters PRPH2-related disorder
  • p.Ser311= Multiple submitters PRPH2-related disorder
  • p.Ser49= Multiple submitters PRPH2-related disorder
  • p.Thr228= Multiple submitters PRPH2-related disorder
  • c.581+16T>C Single submitter PRPH2-related disorder
  • c.581+7G>C Single submitter PRPH2-related disorder
  • c.582-20G>C Single submitter PRPH2-related disorder
  • c.582-7dup Single submitter PRPH2-related disorder
  • c.828+10G>A Single submitter PRPH2-related disorder
  • c.828+12G>A Single submitter PRPH2-related disorder
  • c.828+15A>C Single submitter PRPH2-related disorder
  • c.829-21A>T Single submitter
  • c.829-6C>T Single submitter PRPH2-related disorder
  • c.*484dup Single submitter
  • p.Arg203= Single submitter PRPH2-related disorder
  • p.Asn62= Single submitter PRPH2-related disorder
  • p.Asp145= Single submitter PRPH2-related disorder
  • p.Asp201= Single submitter PRPH2-related disorder
  • p.Asp207= Single submitter PRPH2-related disorder
  • p.Asp291= Single submitter PRPH2-related disorder
  • p.Cys72= Single submitter PRPH2-related disorder
  • p.Gln18= Single submitter PRPH2-related disorder
  • p.Gln331= Single submitter PRPH2-related disorder
  • p.Gln341= Single submitter
  • p.Glu321= Single submitter PRPH2-related disorder
  • p.Gly133= Single submitter PRPH2-related disorder
  • p.Gly137= Single submitter PRPH2-related disorder
  • p.Gly208= Single submitter PRPH2-related disorder
  • p.Gly266= Single submitter PRPH2-related disorder
  • p.Gly282= Single submitter PRPH2-related disorder
  • p.Gly340= Single submitter PRPH2-related disorder
  • p.Gly68= Single submitter PRPH2-related disorder
  • p.Ile272= Single submitter PRPH2-related disorder
  • p.Leu112= Single submitter PRPH2-related disorder
  • p.Leu16= Single submitter PRPH2-related disorder
  • p.Leu185= Single submitter PRPH2-related disorder
  • p.Leu205= Single submitter PRPH2-related disorder
  • p.Leu255= Single submitter PRPH2-related disorder
  • p.Leu261= Single submitter PRPH2-related disorder
  • p.Leu270= Single submitter PRPH2-related disorder
  • p.Leu271= Single submitter PRPH2-related disorder
  • p.Leu308= Single submitter PRPH2-related disorder
  • p.Leu326= Single submitter PRPH2-related disorder
  • p.Leu39= Single submitter PRPH2-related disorder
  • p.Leu4= Single submitter PRPH2-related disorder
  • p.Leu70= Single submitter
  • p.Lys135= Single submitter
  • p.Lys197= Single submitter PRPH2-related disorder
  • p.Lys90= Single submitter
  • p.Lys95= Single submitter PRPH2-related disorder
  • p.Phe108= Single submitter PRPH2-related disorder
  • p.Pro219= Single submitter PRPH2-related disorder
  • p.Pro221= Single submitter PRPH2-related disorder
  • p.Pro313= Single submitter PRPH2-related disorder
  • p.Ser188= Single submitter PRPH2-related disorder
  • p.Ser189= Single submitter
  • p.Ser217= Single submitter PRPH2-related disorder
  • p.Ser218= Single submitter PRPH2-related disorder
  • p.Ser27= Single submitter PRPH2-related disorder
  • p.Ser294= Single submitter PRPH2-related disorder
  • p.Ser76= Single submitter PRPH2-related disorder
  • p.Thr129= Single submitter
  • p.Thr269= Single submitter PRPH2-related disorder
  • p.Thr288= Single submitter PRPH2-related disorder
  • p.Thr315= Single submitter PRPH2-related disorder
  • p.Tyr204= Single submitter PRPH2-related disorder
  • p.Val192= Single submitter PRPH2-related disorder
  • p.Val206= Single submitter PRPH2-related disorder
  • p.Val293= Single submitter PRPH2-related disorder
  • c.582-58A>C No assertion criteria

Uncertain significance 274