RECQL4 p.Pro879=
c.2637T>C · rs909977633 · VCV1115067
Likely benign
Single submitter
Classification
Likely benign
ClinVar
Review
Single submitter ★☆☆☆
ClinVar · 1 submitter
gnomAD v4.1
Not reported
no allele count reported in gnomAD v4.1 (AN 1,571,852)
Conditions
1
Baller-Gerold syndrome
Computational evidence
| Protein change | ||
| Missense predictors do not apply to this variant type; conservation carries the signal. | ||
| Splicing | ||
| SpliceAI | — | not assessed · no allele here is in the release |
|---|---|---|
| Constraint at this position | ||
| Conservation | phyloP 0.33 | GERP -2.3 |
| Overall | ||
| CADD | 0.742 | PHRED · no single calibrated threshold — expert panels disagree |
Population frequency
gnomAD v4.1 · exomes + genomes
No allele count reported in gnomAD v4.1 (AN 1,571,852). This is missing data, not an absence: the variant may or may not be present in gnomAD. Rarity (ACMG PM2) and BA1/BS1 cannot be assessed for it.
Variant & gene context
- Gene
- RECQL4
- Protein
- p.Pro879=
- Coding
- c.2637T>C
- MANE Select
- NM_004260
- dbSNP
- rs909977633
- Type
- single nucleotide variant
- Location
- chr8:144512965 (GRCh38)
- Gene constraint
- LOEUF 1.519 · pLI <0.01 (gnomAD)
- Structure
- AlphaFold pLDDT 68.32 · 2 PDB
- Residue 879
- a UniProt-annotated variant site (in rts2); the 'disordered' region
Similar variants
- RECQL4 p.Pro879Leu Uncertain significance ★★ ⚠ same residue
- RECQL4 p.Pro879His Benign/Likely benign ★★ same residue
- RECQL4 p.Pro879Arg Uncertain significance ★ ⚠ same residue
- RECQL4 p.Pro879fs Pathogenic/Likely pathogenic ★★ same residue
- RECQL4 p.Pro879del Uncertain significance ★ same residue
- RECQL4 p.Pro879Ala Uncertain significance ★ ⚠ same residue
- RECQL4 c.1132-1G>A Likely pathogenic ★★ same condition
- RECQL4 c.1259-1G>A Pathogenic/Likely pathogenic ★★ same condition
Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →
Cite Sugi Variant
Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/recql4-p-pro879 (accessed [today's date]).
Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown