Is TTN p.Phe24035= (c.72105T>C) pathogenic?

TTN p.Phe24035= (c.72105T>C) is classified Benign/Likely benign in TTN (ClinVar, Multiple submitters, 17 submitters; last evaluated 2026-02-01). Low-frequency (popmax 1.37%, sas); Associated with Cardiovascular phenotype.

What condition is associated with TTN p.Phe24035= (c.72105T>C)?

TTN p.Phe24035= (c.72105T>C) is associated with Cardiovascular phenotype, cardiomyopathy, tibial muscular dystrophy (ClinVar).

How common is TTN p.Phe24035= (c.72105T>C) in the general population?

TTN p.Phe24035= (c.72105T>C) is low-frequency (popmax 1.37%, sas) (gnomAD).

TTN p.Phe24035=

c.72105T>C · rs397517691 · VCV47307

Benign/Likely benign Multiple submitters

Classification

Benign/Likely benign

ClinVar

Review

Multiple submitters ★★☆☆

ClinVar · 17 submitters

gnomAD v4.1

Rare

low-frequency (popmax 1.37%, sas)

Conditions

Cardiovascular phenotype

Computational evidence

Protein change
Missense predictors do not apply to this variant type; conservation carries the signal.
Splicing
SpliceAI	—	not assessed · no allele here is in the release
Constraint at this position
Conservation	phyloP 1.4	GERP -3, phastCons 1
Overall
CADD	0.318	PHRED · no single calibrated threshold — expert panels disagree

Population frequency

gnomAD v4.1 · exomes + genomes

Grpmax group 1.37% South Asian · 1,249/91,072 alleles

Filtering AF 1.31% ClinGen BA1/BS1 input FAF95, joint · FAF99 1.28%

Overall 0.0816% 1,316/1,613,454 alleles · low-frequency exomes 1,254/1,461,226 · genomes 62/152,228 · joint denominator

Ancestry group	Frequency	1 in
South Asiangrpmax	1.37%	73
Remaining individualsnot grpmax-eligible	0.0929%	1,077
Middle Eastern	0.0496%	2,017
African / African-American	0.00133%	75,016
European (non-Finnish)	0.000424%	235,922

Rarity supports pathogenicity (ACMG PM2); frequency above a disease-specific BA1/BS1 threshold argues against it. A variant frequent in one ancestry group can be near-absent in others, so a single global figure can mislead.

Variant & gene context

Gene: TTN
Protein: p.Phe24035=
Coding: c.72105T>C
MANE Select: NM_001267550
dbSNP: rs397517691
Type: single nucleotide variant
Location: chr2:178574027 (GRCh38)
Gene constraint: LOEUF 0.479 · pLI <0.01 · ClinGen HI 2/3 (gnomAD)
Residue 24035: the fibronectin type-iii 74 domain

Full TTN gene report on Sugi Atlas → Gene function, pathways, protein structure, interactions & more

Disease context

Cardiovascular phenotype — disease report on Sugi Atlas → Associated genes, phenotypes, clinical trials & treatments

Also linked: cardiomyopathy tibial muscular dystrophy myopathy, myofibrillar, 9, with early respiratory failure dilated cardiomyopathy 1G autosomal recessive limb-girdle muscular dystrophy type 2J early-onset myopathy with fatal cardiomyopathy

Similar variants

TTN p.Phe24035Tyr Uncertain significance ★★ ⚠ same residue
TTN p.Phe24035Cys Conflicting classifications of pathogenicity ★ same residue
TTN c.100171+1G>A Likely pathogenic ★★ same condition
TTN c.100766-1G>T Likely pathogenic ★★ same condition
TTN c.100766-2A>T Likely pathogenic ★★ same condition
TTN c.106375-2A>G Pathogenic/Likely pathogenic ★★ same condition
TTN c.106531+1G>A Pathogenic/Likely pathogenic ★★ same condition
TTN c.107224-1G>C Pathogenic/Likely pathogenic ★★ same condition

Built on 18 open, versioned datasets — ClinVar, gnomAD, AlphaMissense, REVEL, ClinGen & more — plus Sugi Variant's own cross-source analysis. Source data 2026-01–2026-10, ClinVar 2026-10. Full sources & versions →

Cite Sugi Variant

Gür T. Sugi Variant: A Deterministic Per-Variant Germline Reference from a Knowledge Graph for Humans and AI Agents. 2026. doi:10.5281/zenodo.21509445. This variant: https://sugi.bio/variant/ttn-p-phe24035 (accessed [today's date]).

Preprint & method: sugi.bio/variant/method Machine-readable: this page as Markdown