Lynamicin E

Lynamicin E

SCHEMBL12658018

COC(=O)c1[nH]c(C(=O)OC)c(-c2c[nH]c3ccc(Cl)cc23)c1-c1c[nH]c2ccccc12

nearest known ligand 0.77

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Predicted protein targets (top 20)

geneUniProtsupporting neighboursconfidence
▸ NR4A2 P43354 3/20 0.56
▸ MAPT P10636 3/20 0.49
▸ ALPL P05186 1/20 0.49
▸ HTT P42858 1/20 0.49
▸ CREBBP Q92793 1/20 0.48
▸ ALDH1A1 P00352 3/20 0.47
▸ HPGD P15428 3/20 0.47
▸ KDM4E B2RXH2 2/20 0.47
▸ MEN1 O00255 1/20 0.47
▸ NPC1 O15118 1/20 0.47
▸ GAA P10253 1/20 0.47
▸ ALOX12 P18054 1/20 0.47
▸ RAB9A P51151 1/20 0.47
▸ KMT2A Q03164 1/20 0.47
▸ NPSR1 Q6W5P4 1/20 0.47
▸ TUBB4A P04350 4/20 0.47
▸ TUBB P07437 4/20 0.47
▸ TUBA3C P0DPH7 4/20 0.47
▸ TUBA1B P68363 4/20 0.47
▸ TUBA4A P68366 4/20 0.47

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
Lynamicin D SCHEMBL12658118 0.94 NR4A2 (0.63) NR4A2MAPTALDH1A1HPGDKDM4E
Lycogarubin C SCHEMBL30742812 0.89 NR4A2 (0.59) NR4A2MAPTALPLHTTCREBBP
Lycogarubin C SCHEMBL12658123 0.89 NR4A2 (0.59) NR4A2MAPTALPLHTTCREBBP
SCHEMBL12658120 0.87 NR4A2 (0.55) NR4A2MAPTALDH1A1HPGDKDM4E
SCHEMBL12658125 0.87 NR4A2 (0.50) NR4A2MAPTALDH1A1HPGDKDM4E
Lycogarubin B SCHEMBL31061720 0.87 HTT (0.50) NR4A2MAPTALPLHTTCREBBP
SCHEMBL12658122 0.86 MAPT (0.49) NR4A2MAPTALPLHTTCREBBP
SCHEMBL12658019 0.84 NR4A2 (0.52) NR4A2MAPTALDH1A1HPGDKDM4E
Lynamicin A SCHEMBL12658027 0.83 NR4A2 (0.61) NR4A2MAPTALDH1A1HPGDKDM4E
SCHEMBL12658025 0.81 ALPL (0.49) NR4A2MAPTALPLHTTCREBBP

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 6 patents. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
EP-1711486-B1 BIS-INDOLE PYRROLES USEFUL AS ANTIMICROBIAL AGENTS NEREUS PHARMACEUTICALS INC (US) 2011-05-11 — — EP disclosed
US-7375129-B2 Bis-indole pyrroles useful as antimicrobials agents NEREUS PHARMACEUTICALS, INC. (US) 2008-05-20 — — US disclosed
US-20070149601-A1 Bis-indole pyrroles useful as antimicrobials agents PRIVATE LIFE BIOMED AG (DE) 2007-06-28 — — US disclosed
US-20070149601-A1 Bis-indole pyrroles useful as antimicrobials agents PRIVATE LIFE BIOMED AG (DE) 2007-06-28 — — US disclosed
US-7166634-B2 Bis-indole pyrroles useful as antimicrobials agents NEREUS PHARMACEUTICALS, INC. (US) 2007-01-23 — — US disclosed
US-7166634-B2 Bis-indole pyrroles useful as antimicrobials agents NEREUS PHARMACEUTICALS, INC. (US) 2007-01-23 — — US disclosed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (1 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20070149601-A1 Bis-indole pyrroles useful as antimicrobials agents IDO1, IDO2, TPH1 NR4A2 4802/4885MAPT 1564/4885ALPL 548/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.

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