ARG1 — 564 ClinVar variants

All ClinVar germline ARG1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 136 flagged for review →

60 Pathogenic · 21 Pathogenic/Likely pathogenic · 51 Likely pathogenic · 17 Conflicting · 17 Benign · 2 Benign/Likely benign · 240 Likely benign · 156 Uncertain significance

Full ARG1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 136

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 1

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 9

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 99

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 27

The independent predictors disagree with each other — read with care.

All ARG1 variants

Pathogenic 60

Pathogenic/Likely pathogenic 21

Likely pathogenic 51

Conflicting classifications of pathogenicity 17

Benign 17

Benign/Likely benign 2

  • p.Phe198= Multiple submitters arginase deficiency
  • p.Phe304= Multiple submitters arginase deficiency

Likely benign 240

Uncertain significance 156