HFE — 317 ClinVar variants

All ClinVar germline HFE variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 94 flagged for review →

23 Pathogenic · 9 Pathogenic/Likely pathogenic · 13 Likely pathogenic · 15 Conflicting · 8 Benign · 3 Benign/Likely benign · 128 Likely benign · 118 Uncertain significance

Full HFE gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 94

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors vs ClinVar 2

ClinVar calls these pathogenic, but the computational predictors lean tolerated — the highest-value review flag.

Predictors agree, ClinVar conflicts 4

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification.

Predictors lean, ClinVar uncertain 65

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification.

Predictors split 23

The independent predictors disagree with each other — read with care.

All HFE variants

Pathogenic 23

Pathogenic/Likely pathogenic 9

  • c.1006+1G>A Multiple submitters Alzheimer disease type 1
  • c.616+1G>A Multiple submitters hemochromatosis type 1
  • p.Arg71Ter Multiple submitters hemochromatosis type 1
  • p.Gln283Pro Multiple submitters hemochromatosis type 1 ⚠
  • p.Glu298Ter Multiple submitters hereditary hemochromatosis
  • p.Leu183fs Multiple submitters hereditary hemochromatosis
  • p.Leu183Pro Multiple submitters hereditary hemochromatosis
  • p.Lys254Ter Multiple submitters hemochromatosis type 1
  • p.Trp94fs Multiple submitters hereditary hemochromatosis

Likely pathogenic 13

Conflicting classifications of pathogenicity 15

  • c.1006+14A>G Single submitter hereditary hemochromatosis
  • c.616+6G>A Single submitter hereditary hemochromatosis
  • c.-7T>C Single submitter hereditary hemochromatosis
  • c.*198C>T Single submitter microvascular complications of diabetes, susceptibility to, 7
  • c.*988G>A Single submitter hemochromatosis type 1
  • c.*991C>T Single submitter hemochromatosis type 1
  • p.Arg226Gln Single submitter Inborn genetic diseases ⚠
  • p.Arg23His Single submitter hereditary hemochromatosis ⚠
  • p.Arg67Cys Single submitter hereditary hemochromatosis ⚠
  • p.Glu277Lys Single submitter hereditary hemochromatosis ⚠
  • p.Pro7= Single submitter hemochromatosis type 1
  • p.Ser65Cys Single submitter microvascular complications of diabetes, susceptibility to, 7 ⚠
  • p.Thr17Ile Single submitter hemochromatosis type 1 ⚠
  • p.Tyr342= Single submitter hemochromatosis type 1
  • p.Val295Ala Single submitter hemochromatosis type 1 ⚠

Benign 8

Benign/Likely benign 3

  • c.1006+19del Multiple submitters hereditary hemochromatosis
  • c.340+4T>C Multiple submitters hemochromatosis type 1
  • p.His63= Multiple submitters hemochromatosis type 1

Likely benign 128

  • c.341-11G>A Multiple submitters hereditary hemochromatosis
  • c.616+4T>C Multiple submitters
  • c.76+12G>A Multiple submitters hereditary hemochromatosis
  • c.893-50G>A Multiple submitters
  • p.Ala158= Multiple submitters hereditary hemochromatosis
  • p.Ala345= Multiple submitters hereditary hemochromatosis
  • p.Asp144= Multiple submitters hereditary hemochromatosis
  • p.Glu298= Multiple submitters hereditary hemochromatosis
  • p.Leu257= Multiple submitters hereditary hemochromatosis
  • p.Leu57= Multiple submitters hereditary hemochromatosis
  • p.Phe251= Multiple submitters hereditary hemochromatosis
  • p.Pro164= Multiple submitters hereditary hemochromatosis
  • p.Pro301= Multiple submitters hereditary hemochromatosis
  • p.Thr281= Multiple submitters hereditary hemochromatosis
  • p.Tyr264= Multiple submitters hereditary hemochromatosis
  • c.1006+17G>A Single submitter hereditary hemochromatosis
  • c.1006+9del Single submitter hereditary hemochromatosis
  • c.1006+9G>A Single submitter hereditary hemochromatosis
  • c.1007-205del Single submitter
  • c.1007-284T>C Single submitter
  • c.1007-5C>T Single submitter hereditary hemochromatosis
  • c.1007-8C>T Single submitter hereditary hemochromatosis
  • c.340+11del Single submitter hereditary hemochromatosis
  • c.340+12G>A Single submitter hereditary hemochromatosis
  • c.340+19T>C Single submitter hereditary hemochromatosis
  • c.340+8G>C Single submitter hereditary hemochromatosis
  • c.341-17G>C Single submitter hereditary hemochromatosis
  • c.341-4C>G Single submitter hereditary hemochromatosis
  • c.616+13C>T Single submitter hereditary hemochromatosis
  • c.616+15C>T Single submitter hereditary hemochromatosis
  • c.616+18T>G Single submitter hereditary hemochromatosis
  • c.616+9G>T Single submitter hereditary hemochromatosis
  • c.617-11T>C Single submitter hereditary hemochromatosis
  • c.76+11G>A Single submitter hereditary hemochromatosis
  • c.76+13G>A Single submitter hereditary hemochromatosis
  • c.76+15T>G Single submitter hereditary hemochromatosis
  • c.76+17C>T Single submitter hereditary hemochromatosis
  • c.76+20G>A Single submitter hereditary hemochromatosis
  • c.76+20G>C Single submitter hereditary hemochromatosis
  • c.76+8C>A Single submitter hereditary hemochromatosis
  • c.76+8C>T Single submitter hereditary hemochromatosis
  • c.76+9G>T Single submitter hereditary hemochromatosis
  • c.77-10C>G Single submitter
  • c.77-16_77-11dup Single submitter hereditary hemochromatosis
  • c.77-5T>C Single submitter hereditary hemochromatosis
  • c.892+18G>A Single submitter hereditary hemochromatosis
  • c.892+57G>A Single submitter
  • c.892+7G>A Single submitter hereditary hemochromatosis
  • c.893-18T>C Single submitter hereditary hemochromatosis
  • c.893-8T>C Single submitter hereditary hemochromatosis
  • c.*170C>G Single submitter
  • p.Ala162= Single submitter hereditary hemochromatosis
  • p.Ala176= Single submitter hereditary hemochromatosis
  • p.Ala18= Single submitter hereditary hemochromatosis
  • p.Ala248= Single submitter hereditary hemochromatosis
  • p.Ala8= Single submitter hereditary hemochromatosis
  • p.Arg171= Single submitter hereditary hemochromatosis
  • p.Arg175= Single submitter hereditary hemochromatosis
  • p.Arg67= Single submitter hereditary hemochromatosis
  • p.Asn179= Single submitter hereditary hemochromatosis
  • p.Asp242= Single submitter hereditary hemochromatosis
  • p.Asp255= Single submitter hereditary hemochromatosis
  • p.Asp41= Single submitter hereditary hemochromatosis
  • p.Asp55= Single submitter hereditary hemochromatosis
  • p.Cys225= Single submitter hereditary hemochromatosis
  • p.Gln193= Single submitter
  • p.Gln233= Single submitter hereditary hemochromatosis
  • p.Gln283= Single submitter hereditary hemochromatosis
  • p.Glu168= Single submitter hereditary hemochromatosis
  • p.Glu196= Single submitter hereditary hemochromatosis
  • p.Glu64= Single submitter hereditary hemochromatosis
  • p.Gly139= Single submitter hereditary hemochromatosis
  • p.Gly2= Single submitter hereditary hemochromatosis
  • p.Gly260= Single submitter hereditary hemochromatosis
  • p.Gly266= Single submitter hereditary hemochromatosis
  • p.Gly308= Single submitter hereditary hemochromatosis
  • p.Gly334= Single submitter hereditary hemochromatosis
  • p.Gly43= Single submitter hereditary hemochromatosis
  • p.Gly93= Single submitter hereditary hemochromatosis
  • p.His28= Single submitter hereditary hemochromatosis
  • p.Ile121= Single submitter hereditary hemochromatosis
  • p.Ile296Thr Single submitter Inborn genetic diseases
  • p.Ile319= Single submitter hereditary hemochromatosis
  • p.Leu118= Single submitter hereditary hemochromatosis
  • p.Leu12= Single submitter hereditary hemochromatosis
  • p.Leu15= Single submitter hereditary hemochromatosis
  • p.Leu153= Single submitter hereditary hemochromatosis
  • p.Leu191= Single submitter
  • p.Leu194= Single submitter hereditary hemochromatosis
  • p.Leu195= Single submitter hereditary hemochromatosis
  • p.Leu202= Single submitter hereditary hemochromatosis
  • p.Leu223= Single submitter hereditary hemochromatosis
  • p.Leu240= Single submitter hereditary hemochromatosis
  • p.Leu289= Single submitter hereditary hemochromatosis
  • p.Leu30= Single submitter hereditary hemochromatosis
  • p.Leu305= Single submitter hereditary hemochromatosis
  • p.Leu33= Single submitter hereditary hemochromatosis
  • p.Leu46= Single submitter hereditary hemochromatosis
  • p.Leu50= Single submitter
  • p.Leu9= Single submitter hereditary hemochromatosis
  • p.Lys238= Single submitter hereditary hemochromatosis
  • p.Lys249= Single submitter hereditary hemochromatosis
  • p.Lys92= Single submitter hereditary hemochromatosis
  • p.Phe326= Single submitter hereditary hemochromatosis
  • p.Phe34= Single submitter
  • p.Phe47= Single submitter hereditary hemochromatosis
  • p.Phe58= Single submitter hereditary hemochromatosis
  • p.Pro232= Single submitter hereditary hemochromatosis
  • p.Pro253= Single submitter hereditary hemochromatosis
  • p.Pro273= Single submitter hereditary hemochromatosis
  • p.Pro287= Single submitter hereditary hemochromatosis
  • p.Pro292= Single submitter hereditary hemochromatosis
  • p.Ser115= Single submitter hereditary hemochromatosis
  • p.Ser29= Single submitter hereditary hemochromatosis
  • p.Ser76= Single submitter hereditary hemochromatosis
  • p.Thr132= Single submitter hereditary hemochromatosis
  • p.Thr17= Single submitter hereditary hemochromatosis
  • p.Thr221= Single submitter hereditary hemochromatosis
  • p.Thr236= Single submitter hereditary hemochromatosis
  • p.Thr304= Single submitter hereditary hemochromatosis
  • p.Tyr138= Single submitter hereditary hemochromatosis
  • p.Tyr231= Single submitter hereditary hemochromatosis
  • p.Tyr280= Single submitter hereditary hemochromatosis
  • p.Tyr52= Single submitter hereditary hemochromatosis
  • p.Val19= Single submitter hereditary hemochromatosis
  • p.Val212= Single submitter hereditary hemochromatosis
  • p.Val220= Single submitter hereditary hemochromatosis
  • p.Val317= Single submitter hereditary hemochromatosis

Uncertain significance 118