SCHEMBL3606204

SCHEMBL3606204

O=C(Cn1ccc2cccc(-c3ccc(F)cc3)c21)NCCCNCC1CCCCC1

nearest known ligand 0.41

Predicted protein targets (top 20)

geneUniProtsupporting neighboursconfidence
GRIN2B Q13224 4/20 0.41
KDM4E B2RXH2 3/20 0.39
MAPT P10636 1/20 0.39
HTT P42858 1/20 0.39
HDAC3 O15379 1/20 0.39
HDAC4 P56524 1/20 0.39
HDAC1 Q13547 1/20 0.39
HDAC7 Q8WUI4 1/20 0.39
HDAC2 Q92769 1/20 0.39
HDAC10 Q969S8 1/20 0.39
HDAC11 Q96DB2 1/20 0.39
HDAC8 Q9BY41 1/20 0.39
HDAC6 Q9UBN7 1/20 0.39
HDAC9 Q9UKV0 1/20 0.39
HDAC5 Q9UQL6 1/20 0.39
ALDH1A1 P00352 2/20 0.38
MEN1 O00255 1/20 0.38
CYP2D6 P10635 1/20 0.38
KMT2A Q03164 1/20 0.38
POLB P06746 1/20 0.38

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
SCHEMBL3608260 0.94 GRIN2B (0.42) GRIN2BKDM4EMAPTHTTALDH1A1
SCHEMBL3597289 0.86 ALDH1A1 (0.41) KDM4EMAPTHTTALDH1A1MEN1
SCHEMBL3605994 0.85 PIM1 (0.42) GRIN2BKDM4EMAPTHTTALDH1A1
SCHEMBL3608180 0.85 HTT (0.45) KDM4EMAPTHTTALDH1A1MEN1
SCHEMBL3594707 0.85 NPC1 (0.41) KDM4EMAPTHTTALDH1A1KMT2A
SCHEMBL3605625 0.85 MGLL (0.38) KDM4EMAPTHTTHDAC6ALDH1A1
SCHEMBL3589653 0.83 ROCK2 (0.38) KDM4EMAPTHTTALDH1A1MEN1
SCHEMBL3606203 0.83 CYP2D6 (0.45) GRIN2BKDM4EMAPTHTTALDH1A1
SCHEMBL3605921 0.83 EPHX2 (0.41) KDM4EHTTALDH1A1MEN1KMT2A
SCHEMBL3589635 0.81 NPY5R (0.41) GRIN2BKDM4EMAPTHTTALDH1A1

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 3 patents. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
US-7807704-B2 Bicyclic, nitrogen-containing compounds modulating CXCR4 and/or CCXCKR2 CHEMOCENTRYX, INC. (US) 2010-10-05 US disclosed
US-20070275965-A1 CXCR4 modulators CHEMOCENTRYX, INC. (US) 2007-11-29 US disclosed
WO-2007115231-A2 CXCR4 MODULATORS CHEMOCENTRYX, INC. (US) 2007-10-11 WO disclosed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (1 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20070275965-A1 CXCR4 modulators CXCL12, CXCR4, CXCR1 GRIN2B 2950/4885KDM4E 4801/4885MAPT 2809/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.