SCHEMBL542020

SCHEMBL542020

O=C(c1cnc(NC23CCC(CC2)CC3)nc1C(F)(F)F)N1CCS(O)(O)CC1

nearest known ligand 0.38

Predicted protein targets (top 13)

geneUniProtsupporting neighboursconfidence
CXCR4 P61073 1/20 0.38
SCD O00767 1/20 0.36
VNN1 O95497 9/20 0.35
JUN P05412 1/20 0.33
NFKB1 P19838 1/20 0.33
NFKB2 Q00653 1/20 0.33
RELA Q04206 1/20 0.33
CNR2 P34972 8/20 0.33
CYP2C19 P33261 6/20 0.33
CYP3A4 P08684 5/20 0.33
CYP2C9 P11712 5/20 0.33
CYP2D6 P10635 4/20 0.33
CYP1A2 P05177 4/20 0.33

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
SCHEMBL541926 0.94 CXCR4 (0.37) CXCR4SCDVNN1JUNNFKB1
SCHEMBL542021 0.92 CXCR4 (0.38) CXCR4SCDVNN1JUNNFKB1
SCHEMBL6521503 0.88 HDAC3 (0.41) CXCR4SCDVNN1JUNNFKB1
SCHEMBL541925 0.86 CXCR4 (0.37) CXCR4SCDVNN1JUNNFKB1
SCHEMBL541984 0.85 CXCR4 (0.39) CXCR4SCDVNN1JUNNFKB1
SCHEMBL15397183 0.84 CXCR4 (0.36) CXCR4SCDVNN1CNR2
SCHEMBL541472 0.84 CXCR4 (0.36) CXCR4SCDVNN1JUNNFKB1
SCHEMBL541918 0.83 GSK3A (0.43) CXCR4SCD
SCHEMBL541569 0.82 CXCR4 (0.42) CXCR4SCD
SCHEMBL541530 0.82 CXCR4 (0.34) CXCR4SCD

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 8 patents. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
US-20130310373-A1 PYRIMIDINE COMPOUND ASTELLAS PHARMA INC. (JP) 2013-11-21 US claimed
US-8524727-B2 Pyrimidine compound ASTELLAS PHARMA INC. (JP) 2013-09-03 US claimed
EP-2415765-A1 PYRIMIDINE COMPOUND Astellas Pharma Inc. (JP) 2012-02-08 EP claimed
US-20110053912-A1 PYRIMIDINE COMPOUND ASTELLAS PHARMA INC. (JP) 2011-03-03 US claimed
US-20130310373-A1 PYRIMIDINE COMPOUND ASTELLAS PHARMA INC. (JP) 2013-11-21 US disclosed
US-8524727-B2 Pyrimidine compound ASTELLAS PHARMA INC. (JP) 2013-09-03 US disclosed
EP-2415765-A1 PYRIMIDINE COMPOUND Astellas Pharma Inc. (JP) 2012-02-08 EP disclosed
US-20110053912-A1 PYRIMIDINE COMPOUND ASTELLAS PHARMA INC. (JP) 2011-03-03 US disclosed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (2 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20110053912-A1 PYRIMIDINE COMPOUND CNR2, CNR1, P2RY2 CXCR4 350/4885SCD 1093/4885VNN1 3256/4885
US-20130310373-A1 PYRIMIDINE COMPOUND CNR2, CNR1, P2RY2 CXCR4 206/4885SCD 1251/4885VNN1 2974/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.