ALMS1 — 6971 ClinVar variants

All ClinVar germline ALMS1 variants across every classification, each assembled from ClinVar, gnomAD, AlphaMissense, conservation and more. 3122 flagged for review →

567 Pathogenic · 109 Pathogenic/Likely pathogenic · 264 Likely pathogenic · 483 Conflicting · 80 Benign · 56 Benign/Likely benign · 2354 Likely benign · 3058 Uncertain significance

Full ALMS1 gene report on Sugi Atlas → Gene function, pathways, protein structure, constraint & interactions

⚑ Evidence disagreements 3122

Variants where the independent computational evidence doesn't line up with the clinical picture — a QC signal for a second look, not a reclassification.

Predictors agree, ClinVar conflicts 397

ClinVar submitters conflict, but the independent predictors unanimously agree — a QC review flag, not a reclassification. · showing the 150 best-reviewed of 397

Predictors lean, ClinVar uncertain 2582

ClinVar classifies these uncertain (VUS), but the independent predictors unanimously lean one way — a triage signal for review, not a reclassification. · showing the 150 best-reviewed of 2582

Predictors split 132

The independent predictors disagree with each other — read with care.

All ALMS1 variants

Pathogenic 567

Showing the top 300 by review status; the full set is in the sitemap.

Pathogenic/Likely pathogenic 109

Likely pathogenic 264

Conflicting classifications of pathogenicity 483

Showing the top 300 by review status; the full set is in the sitemap.

Benign 80

Benign/Likely benign 56

Likely benign 2354

Showing the top 300 by review status; the full set is in the sitemap.

  • c.10213+22C>T Multiple submitters
  • c.10213+7A>G Multiple submitters Alstrom syndrome
  • c.10214-12dup Multiple submitters Alstrom syndrome
  • c.10214-4G>A Multiple submitters Cardiovascular phenotype
  • c.11547+13A>G Multiple submitters Alstrom syndrome
  • c.11547+16T>C Multiple submitters Alstrom syndrome
  • c.11669-17A>G Multiple submitters Alstrom syndrome
  • c.11872+12A>G Multiple submitters Alstrom syndrome
  • c.11872+9C>G Multiple submitters Alstrom syndrome
  • c.12114+14G>T Multiple submitters Alstrom syndrome
  • c.12114+33G>A Multiple submitters
  • c.12115-7C>T Multiple submitters Alstrom syndrome
  • c.12298+13C>T Multiple submitters Alstrom syndrome
  • c.12299-19C>T Multiple submitters Alstrom syndrome
  • c.1237+8C>A Multiple submitters Alstrom syndrome
  • c.1237+9C>G Multiple submitters Alstrom syndrome
  • c.1238-9A>G Multiple submitters Alstrom syndrome
  • c.1432+15G>A Multiple submitters Alstrom syndrome
  • c.1432+7A>G Multiple submitters Alstrom syndrome
  • c.325-8A>G Multiple submitters Alstrom syndrome
  • c.451-4C>G Multiple submitters Cardiovascular phenotype
  • c.451-5T>G Multiple submitters Alstrom syndrome
  • c.646+8C>G Multiple submitters Alstrom syndrome
  • c.764+17G>T Multiple submitters Alstrom syndrome
  • c.764+19A>G Multiple submitters Alstrom syndrome
  • c.765-15_765-12del Multiple submitters Alstrom syndrome
  • c.765-4T>C Multiple submitters Alstrom syndrome
  • c.7675-4C>T Multiple submitters Cardiovascular phenotype
  • c.7675-64A>T Multiple submitters
  • c.7675-66A>T Multiple submitters
  • c.9781+19A>G Multiple submitters Alstrom syndrome
  • c.9781+19del Multiple submitters Alstrom syndrome
  • c.9782-18T>C Multiple submitters Alstrom syndrome
  • c.9907+129T>G Multiple submitters
  • c.9907+14A>G Multiple submitters Alstrom syndrome
  • c.9907+17A>C Multiple submitters Alstrom syndrome
  • c.9907+8G>A Multiple submitters Alstrom syndrome
  • c.9908-12G>A Multiple submitters Alstrom syndrome
  • c.9908-13C>T Multiple submitters Alstrom syndrome
  • p.Ala1130= Multiple submitters Cardiovascular phenotype
  • p.Ala1225= Multiple submitters Alstrom syndrome
  • p.Ala1262= Multiple submitters Cardiovascular phenotype
  • p.Ala1310= Multiple submitters ALMS1-related disorder
  • p.Ala1315= Multiple submitters Alstrom syndrome
  • p.Ala1410= Multiple submitters Cardiovascular phenotype
  • p.Ala1528= Multiple submitters Cardiovascular phenotype
  • p.Ala1553= Multiple submitters Cardiovascular phenotype
  • p.Ala1619= Multiple submitters Cardiovascular phenotype
  • p.Ala1646= Multiple submitters Cardiovascular phenotype
  • p.Ala1699= Multiple submitters Alstrom syndrome
  • p.Ala1745= Multiple submitters Cardiovascular phenotype
  • p.Ala1891= Multiple submitters Alstrom syndrome
  • p.Ala2165= Multiple submitters Cardiovascular phenotype
  • p.Ala2419= Multiple submitters Alstrom syndrome
  • p.Ala2496= Multiple submitters Alstrom syndrome
  • p.Ala276= Multiple submitters Cardiovascular phenotype
  • p.Ala282= Multiple submitters Cardiovascular phenotype
  • p.Ala2935= Multiple submitters Cardiovascular phenotype
  • p.Ala30= Multiple submitters Cardiovascular phenotype
  • p.Ala3077= Multiple submitters Cardiovascular phenotype
  • p.Ala3108= Multiple submitters Cardiovascular phenotype
  • p.Ala3393= Multiple submitters Cardiovascular phenotype
  • p.Ala34= Multiple submitters Cardiovascular phenotype
  • p.Ala3408= Multiple submitters Cardiovascular phenotype
  • p.Ala3411= Multiple submitters Alstrom syndrome
  • p.Ala3412= Multiple submitters Cardiovascular phenotype
  • p.Ala3480= Multiple submitters Alstrom syndrome
  • p.Ala3793= Multiple submitters Cardiovascular phenotype
  • p.Ala4018= Multiple submitters Cardiovascular phenotype
  • p.Ala4078= Multiple submitters Alstrom syndrome
  • p.Ala4149= Multiple submitters Cardiovascular phenotype
  • p.Ala702= Multiple submitters Cardiovascular phenotype
  • p.Ala76= Multiple submitters Cardiovascular phenotype
  • p.Ala794= Multiple submitters Cardiovascular phenotype
  • p.Ala810= Multiple submitters Cardiovascular phenotype
  • p.Ala834= Multiple submitters Cardiovascular phenotype
  • p.Ala839= Multiple submitters Alstrom syndrome
  • p.Ala859= Multiple submitters Cardiovascular phenotype
  • p.Ala983= Multiple submitters Cardiovascular phenotype
  • p.Arg1148= Multiple submitters Cardiovascular phenotype
  • p.Arg1668= Multiple submitters Alstrom syndrome
  • p.Arg1818= Multiple submitters Cardiovascular phenotype
  • p.Arg1832= Multiple submitters Alstrom syndrome
  • p.Arg1943His Multiple submitters Cardiovascular phenotype
  • p.Arg2145= Multiple submitters Cardiovascular phenotype
  • p.Arg2159= Multiple submitters Alstrom syndrome
  • p.Arg2345= Multiple submitters Alstrom syndrome
  • p.Arg2564= Multiple submitters Cardiovascular phenotype
  • p.Arg2588= Multiple submitters Cardiovascular phenotype
  • p.Arg2792= Multiple submitters Cardiovascular phenotype
  • p.Arg2885= Multiple submitters Alstrom syndrome
  • p.Arg2927= Multiple submitters Alstrom syndrome
  • p.Arg2943= Multiple submitters Cardiovascular phenotype
  • p.Arg3257= Multiple submitters Cardiovascular phenotype
  • p.Arg3620= Multiple submitters Cardiovascular phenotype
  • p.Arg3702= Multiple submitters Cardiovascular phenotype
  • p.Arg3798= Multiple submitters Cardiovascular phenotype
  • p.Arg3805= Multiple submitters Alstrom syndrome
  • p.Arg4058= Multiple submitters Cardiovascular phenotype
  • p.Arg4118= Multiple submitters Alstrom syndrome
  • p.Arg767= Multiple submitters Cardiovascular phenotype
  • p.Asn1256= Multiple submitters Alstrom syndrome
  • p.Asn1312= Multiple submitters Cardiovascular phenotype
  • p.Asn1407= Multiple submitters Cardiovascular phenotype
  • p.Asn1766= Multiple submitters Cardiovascular phenotype
  • p.Asn1844= Multiple submitters Cardiovascular phenotype
  • p.Asn1898= Multiple submitters Alstrom syndrome
  • p.Asn3599= Multiple submitters Cardiovascular phenotype
  • p.Asn3688= Multiple submitters Cardiovascular phenotype
  • p.Asn3896= Multiple submitters Cardiovascular phenotype
  • p.Asn3951= Multiple submitters Alstrom syndrome
  • p.Asn3976= Multiple submitters Cardiovascular phenotype
  • p.Asn4107= Multiple submitters Cardiovascular phenotype
  • p.Asn877= Multiple submitters Alstrom syndrome
  • p.Asp1037= Multiple submitters Cardiovascular phenotype
  • p.Asp1587= Multiple submitters Alstrom syndrome
  • p.Asp1609= Multiple submitters Cardiovascular phenotype
  • p.Asp186= Multiple submitters Alstrom syndrome
  • p.Asp2243= Multiple submitters Cardiovascular phenotype
  • p.Asp2335= Multiple submitters Cardiovascular phenotype
  • p.Asp2673= Multiple submitters Cardiovascular phenotype
  • p.Asp2677= Multiple submitters Alstrom syndrome
  • p.Asp2875= Multiple submitters Cardiovascular phenotype
  • p.Asp2897= Multiple submitters Cardiovascular phenotype
  • p.Asp3141= Multiple submitters Alstrom syndrome
  • p.Asp3224= Multiple submitters Alstrom syndrome
  • p.Asp340= Multiple submitters Alstrom syndrome
  • p.Asp3561= Multiple submitters Alstrom syndrome
  • p.Asp3770= Multiple submitters Alstrom syndrome
  • p.Asp3786= Multiple submitters Cardiovascular phenotype
  • p.Asp38= Multiple submitters Cardiovascular phenotype
  • p.Asp3945= Multiple submitters Alstrom syndrome
  • p.Asp4012= Multiple submitters Cardiovascular phenotype
  • p.Asp479= Multiple submitters Alstrom syndrome
  • p.Asp55= Multiple submitters Cardiovascular phenotype
  • p.Asp591= Multiple submitters Cardiovascular phenotype
  • p.Asp674= Multiple submitters Cardiovascular phenotype
  • p.Asp70= Multiple submitters Cardiovascular phenotype
  • p.Asp732= Multiple submitters Cardiovascular phenotype
  • p.Asp924= Multiple submitters Cardiovascular phenotype
  • p.Cys157= Multiple submitters Cardiovascular phenotype
  • p.Cys2933= Multiple submitters Cardiovascular phenotype
  • p.Cys3046= Multiple submitters Cardiovascular phenotype
  • p.Cys3800= Multiple submitters Cardiovascular phenotype
  • p.Gln1014= Multiple submitters Alstrom syndrome
  • p.Gln1132= Multiple submitters Cardiovascular phenotype
  • p.Gln129= Multiple submitters Cardiovascular phenotype
  • p.Gln1299= Multiple submitters Cardiovascular phenotype
  • p.Gln1345= Multiple submitters Cardiovascular phenotype
  • p.Gln1383= Multiple submitters Alstrom syndrome
  • p.Gln143= Multiple submitters Alstrom syndrome
  • p.Gln1440= Multiple submitters Cardiovascular phenotype
  • p.Gln1488= Multiple submitters Cardiovascular phenotype
  • p.Gln1542= Multiple submitters Cardiovascular phenotype
  • p.Gln1653= Multiple submitters Alstrom syndrome
  • p.Gln1733= Multiple submitters Cardiovascular phenotype
  • p.Gln197= Multiple submitters Cardiovascular phenotype
  • p.Gln2059= Multiple submitters Alstrom syndrome
  • p.Gln2339= Multiple submitters Cardiovascular phenotype
  • p.Gln2380= Multiple submitters Cardiovascular phenotype
  • p.Gln2488= Multiple submitters Cardiovascular phenotype
  • p.Gln279= Multiple submitters Alstrom syndrome
  • p.Gln2807= Multiple submitters Cardiovascular phenotype
  • p.Gln2909= Multiple submitters Cardiovascular phenotype
  • p.Gln3159= Multiple submitters Alstrom syndrome
  • p.Gln3281= Multiple submitters Alstrom syndrome
  • p.Gln3379= Multiple submitters Cardiovascular phenotype
  • p.Gln3581= Multiple submitters Cardiovascular phenotype
  • p.Gln3611= Multiple submitters Cardiovascular phenotype
  • p.Gln3668= Multiple submitters Cardiovascular phenotype
  • p.Gln3724= Multiple submitters Alstrom syndrome
  • p.Gln3792= Multiple submitters Cardiovascular phenotype
  • p.Gln4009= Multiple submitters Cardiovascular phenotype
  • p.Gln4042= Multiple submitters Cardiovascular phenotype
  • p.Gln490= Multiple submitters Cardiovascular phenotype
  • p.Gln519= Multiple submitters Cardiovascular phenotype
  • p.Gln539= Multiple submitters Cardiovascular phenotype
  • p.Gln727= Multiple submitters Cardiovascular phenotype
  • p.Gln766= Multiple submitters Cardiovascular phenotype
  • p.Gln776= Multiple submitters Alstrom syndrome
  • p.Glu1016= Multiple submitters Cardiovascular phenotype
  • p.Glu1167= Multiple submitters Alstrom syndrome
  • p.Glu1605= Multiple submitters Alstrom syndrome
  • p.Glu1855= Multiple submitters Alstrom syndrome
  • p.Glu1909= Multiple submitters Alstrom syndrome
  • p.Glu1994= Multiple submitters Cardiovascular phenotype
  • p.Glu20= Multiple submitters Cardiovascular phenotype
  • p.Glu21= Multiple submitters Alstrom syndrome
  • p.Glu22= Multiple submitters Cardiovascular phenotype
  • p.Glu23= Multiple submitters Alstrom syndrome
  • p.Glu2393= Multiple submitters Cardiovascular phenotype
  • p.Glu24= Multiple submitters Cardiovascular phenotype
  • p.Glu2541= Multiple submitters Cardiovascular phenotype
  • p.Glu2571= Multiple submitters Alstrom syndrome
  • p.Glu2580= Multiple submitters Cardiovascular phenotype
  • p.Glu2823= Multiple submitters Alstrom syndrome
  • p.Glu2886= Multiple submitters Alstrom syndrome
  • p.Glu2889= Multiple submitters Alstrom syndrome
  • p.Glu2967= Multiple submitters Cardiovascular phenotype
  • p.Glu3112= Multiple submitters Alstrom syndrome
  • p.Glu3231= Multiple submitters Cardiovascular phenotype
  • p.Glu3397= Multiple submitters Alstrom syndrome
  • p.Glu3454= Multiple submitters Cardiovascular phenotype
  • p.Glu3462= Multiple submitters Cardiovascular phenotype
  • p.Glu3468= Multiple submitters Cardiovascular phenotype
  • p.Glu3524= Multiple submitters Alstrom syndrome
  • p.Glu3622= Multiple submitters Cardiovascular phenotype
  • p.Glu3691= Multiple submitters Alstrom syndrome
  • p.Glu3741= Multiple submitters Cardiovascular phenotype
  • p.Glu4075= Multiple submitters Cardiovascular phenotype
  • p.Glu45= Multiple submitters Alstrom syndrome
  • p.Glu515= Multiple submitters Alstrom syndrome
  • p.Glu647= Multiple submitters Alstrom syndrome
  • p.Glu656= Multiple submitters Alstrom syndrome
  • p.Glu729= Multiple submitters Alstrom syndrome
  • p.Glu768= Multiple submitters Cardiovascular phenotype
  • p.Gly1032= Multiple submitters Alstrom syndrome
  • p.Gly1135= Multiple submitters Cardiovascular phenotype
  • p.Gly1176= Multiple submitters Alstrom syndrome
  • p.Gly145= Multiple submitters Cardiovascular phenotype
  • p.Gly1925= Multiple submitters Cardiovascular phenotype
  • p.Gly1979= Multiple submitters Cardiovascular phenotype
  • p.Gly2748= Multiple submitters Cardiovascular phenotype
  • p.Gly2855= Multiple submitters Cardiovascular phenotype
  • p.Gly302= Multiple submitters Alstrom syndrome
  • p.Gly3350= Multiple submitters Cardiovascular phenotype
  • p.Gly3502= Multiple submitters Cardiovascular phenotype
  • p.Gly3656= Multiple submitters Cardiovascular phenotype
  • p.Gly395= Multiple submitters Cardiovascular phenotype
  • p.Gly3984= Multiple submitters Alstrom syndrome
  • p.Gly606= Multiple submitters Cardiovascular phenotype
  • p.Gly613= Multiple submitters Cardiovascular phenotype
  • p.Gly892= Multiple submitters Cardiovascular phenotype
  • p.His115= Multiple submitters Cardiovascular phenotype
  • p.His1447= Multiple submitters Cardiovascular phenotype
  • p.His1494= Multiple submitters Alstrom syndrome
  • p.His156= Multiple submitters ALMS1-related disorder
  • p.His2201= Multiple submitters Cardiovascular phenotype
  • p.His2582= Multiple submitters Alstrom syndrome
  • p.His2639= Multiple submitters Alstrom syndrome
  • p.His2910= Multiple submitters Alstrom syndrome
  • p.His3006= Multiple submitters Cardiovascular phenotype
  • p.His3498= Multiple submitters Cardiovascular phenotype
  • p.His387= Multiple submitters Alstrom syndrome
  • p.His3956= Multiple submitters Cardiovascular phenotype
  • p.His577= Multiple submitters Cardiovascular phenotype
  • p.Ile1466= Multiple submitters Cardiovascular phenotype
  • p.Ile1998= Multiple submitters Cardiovascular phenotype
  • p.Ile3204= Multiple submitters Cardiovascular phenotype
  • p.Ile3711= Multiple submitters Cardiovascular phenotype
  • p.Ile4049= Multiple submitters Cardiovascular phenotype
  • p.Ile506= Multiple submitters Alstrom syndrome
  • p.Leu1027= Multiple submitters Alstrom syndrome
  • p.Leu1059= Multiple submitters Cardiovascular phenotype
  • p.Leu1396= Multiple submitters Cardiovascular phenotype
  • p.Leu1679= Multiple submitters Cardiovascular phenotype
  • p.Leu1736= Multiple submitters Cardiovascular phenotype
  • p.Leu1778= Multiple submitters Cardiovascular phenotype
  • p.Leu1783= Multiple submitters Cardiovascular phenotype
  • p.Leu2161= Multiple submitters Alstrom syndrome
  • p.Leu2166= Multiple submitters Cardiovascular phenotype
  • p.Leu2197= Multiple submitters Alstrom syndrome
  • p.Leu2316= Multiple submitters Cardiovascular phenotype
  • p.Leu2363= Multiple submitters Cardiovascular phenotype
  • p.Leu2374= Multiple submitters Alstrom syndrome
  • p.Leu243= Multiple submitters Cardiovascular phenotype
  • p.Leu2532= Multiple submitters Cardiovascular phenotype
  • p.Leu2547= Multiple submitters Cardiovascular phenotype
  • p.Leu2597= Multiple submitters Alstrom syndrome
  • p.Leu2648= Multiple submitters Cardiovascular phenotype
  • p.Leu2863= Multiple submitters Cardiovascular phenotype
  • p.Leu2918= Multiple submitters Cardiovascular phenotype
  • p.Leu2987= Multiple submitters Cardiovascular phenotype
  • p.Leu3071= Multiple submitters Cardiovascular phenotype
  • p.Leu3117= Multiple submitters Cardiovascular phenotype
  • p.Leu3213= Multiple submitters Cardiovascular phenotype
  • p.Leu3237= Multiple submitters Alstrom syndrome
  • p.Leu3554= Multiple submitters Cardiovascular phenotype
  • p.Leu3598= Multiple submitters Cardiovascular phenotype
  • p.Leu3623= Multiple submitters Alstrom syndrome
  • p.Leu3775= Multiple submitters Cardiovascular phenotype
  • p.Leu3790= Multiple submitters Cardiovascular phenotype
  • p.Leu3820= Multiple submitters Cardiovascular phenotype
  • p.Leu4028= Multiple submitters Cardiovascular phenotype
  • p.Leu4029= Multiple submitters Alstrom syndrome
  • p.Leu4059= Multiple submitters Cardiovascular phenotype
  • p.Leu4072= Multiple submitters Alstrom syndrome
  • p.Leu4079= Multiple submitters Alstrom syndrome
  • p.Leu4151= Multiple submitters Cardiovascular phenotype
  • p.Leu4161= Multiple submitters Cardiovascular phenotype
  • p.Leu461= Multiple submitters Alstrom syndrome
  • p.Leu475= Multiple submitters Cardiovascular phenotype
  • p.Leu526= Multiple submitters Cardiovascular phenotype
  • p.Leu547= Multiple submitters Alstrom syndrome
  • p.Leu552= Multiple submitters Cardiovascular phenotype
  • p.Leu607= Multiple submitters Cardiovascular phenotype
  • p.Leu683= Multiple submitters Alstrom syndrome
  • p.Leu783= Multiple submitters Cardiovascular phenotype
  • p.Leu788= Multiple submitters Alstrom syndrome
  • p.Leu940= Multiple submitters Cardiovascular phenotype

Uncertain significance 3058

Showing the top 300 by review status; the full set is in the sitemap.