SCHEMBL3960913

SCHEMBL3960913

Clc1nccc(N2CCN(Cc3ccccc3)CC2)n1

nearest known ligand 0.65

Predicted protein targets (top 19)

geneUniProtsupporting neighboursconfidence
HRH3 Q9Y5N1 2/20 0.65
NPC1 O15118 2/20 0.58
RAB9A P51151 2/20 0.58
CASP1 P29466 1/20 0.55
CASP5 P51878 1/20 0.55
SIGMAR1 Q99720 2/20 0.53
DRD4 P21917 2/20 0.53
MAPT P10636 2/20 0.52
HTT P42858 1/20 0.52
ALDH1A1 P00352 2/20 0.50
ACHE P22303 1/20 0.50
TSHR P16473 1/20 0.50
KDM4E B2RXH2 1/20 0.49
LMNA P02545 1/20 0.49
HPGD P15428 1/20 0.49
SORD Q00796 1/20 0.49
MEN1 O00255 1/20 0.49
KMT2A Q03164 1/20 0.49
CXCR4 P61073 1/20 0.48

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
SCHEMBL27426792 0.87 CASP1 (0.55) HRH3CASP1CASP5SIGMAR1DRD4
SCHEMBL18098559 0.85 CASP1 (0.66) HRH3NPC1RAB9ACASP1CASP5
SCHEMBL27805031 0.81 SORD (0.66) NPC1RAB9AMAPTHTTALDH1A1
SCHEMBL1091086 0.81 CASP1 (0.71) HRH3NPC1RAB9ACASP1CASP5
SCHEMBL15260204 0.80 HRH3 (0.51) HRH3SORD
SCHEMBL3784981 0.79 HRH3 (1.00) HRH3NPC1RAB9ACASP1CASP5
SCHEMBL8111511 0.78 HTT (0.77) NPC1RAB9ASIGMAR1DRD4MAPT
SCHEMBL1090446 0.78 CXCR4 (0.64) HRH3NPC1RAB9ACASP1CASP5
SCHEMBL20361177 0.78 SORD (0.55) ACHESORDMEN1KMT2A
SCHEMBL5987388 0.78 TRPV1 (0.47) HRH3ALDH1A1ACHEKDM4E

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 9 patents. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
US-20090163480-A1 Modified amino acids, pharmaceuticals containing these compounds and method for their production DR. KARL THOMAE GMBH (DE) 2009-06-25 US disclosed
US-7498325-B2 Modified amino acids, pharmaceuticals containing these compounds and method for their production KARL THOMAS GMBH (DE) 2009-03-03 US disclosed
EP-1440976-B1 Modified aminoacids, pharmaceuticals containing these compounds and method for their production BOEHRINGER INGELHEIM PHARMA (DE) 2008-07-23 EP disclosed
US-20040214819-A1 Modified amino acids, pharmaceuticals containing these compounds and method for their production DR. KARL THOMAE GMBH (DE) 2004-10-28 US disclosed
EP-1440976-A1 Modified aminoacids, pharmaceuticals containing these compounds and method for their production Boehringer Ingelheim Pharma GmbH & Co.KG (DE) 2004-07-28 EP disclosed
EP-0927192-B1 MODIFIED AMINOACIDS, PHARMACEUTICALS CONTAINING THESE COMPOUNDS AND METHOD FOR THEIR PRODUCTION BOEHRINGER INGELHEIM PHARMA (DE) 2004-05-12 EP disclosed
US-20030069231-A1 Modified aminoacids, pharmaceuticals containing these compounds and method for their production RUDOLF KLAUS (DE) 2003-04-10 US disclosed
US-6344449-B1 HEADACHE AND MORPHINE DEPENDENCE DR. KARL THOMAE GMBH (DE) 2002-02-05 US disclosed
US-20010036946-A1 Modified amino acids, pharmaceuticals containing these compounds and method for their production RUDOLF KLAUS (DE) 2001-11-01 US disclosed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (4 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20090163480-A1 Modified amino acids, pharmaceuticals containing these compounds and method for their production PTMS, CHRM1, SRMS HRH3 14/4885NPC1 2959/4885RAB9A 695/4885
US-20040214819-A1 Modified amino acids, pharmaceuticals containing these compounds and method for their production PTMS, SRMS, OPRM1 HRH3 65/4885NPC1 2516/4885RAB9A 799/4885
US-20030069231-A1 Modified aminoacids, pharmaceuticals containing these compounds and method for their production SLC1A5, NEFM, SRMS HRH3 30/4885NPC1 2366/4885RAB9A 660/4885
US-20010036946-A1 Modified amino acids, pharmaceuticals containing these compounds and method for their production PTMS, SRMS, OPRM1 HRH3 65/4885NPC1 2516/4885RAB9A 799/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.