Benzimidazole

Benzimidazole

SCHEMBL5070094

NC(N)=O.c1ccc2[nH]cnc2c1

nearest known ligand 0.51

Full drug profile on Sugi Atlas →

Predicted protein targets (top 20)

geneUniProtsupporting neighboursconfidence
▸ KDM4E B2RXH2 3/20 0.51
▸ PARP1 P09874 2/20 0.51
▸ SMN1; SMN2 Q16637 2/20 0.51
▸ RAB9A P51151 2/20 0.51
▸ ALDH1A1 P00352 1/20 0.51
▸ HPGD P15428 1/20 0.51
▸ HTT P42858 1/20 0.51
▸ CTNNB1 P35222 2/20 0.47
▸ WNT3A P56704 2/20 0.47
▸ PDPK1 O15530 1/20 0.46
▸ CA12 O43570 1/20 0.46
▸ ALOX15 P16050 1/20 0.46
▸ CA9 Q16790 1/20 0.46
▸ TNKS2 Q9H2K2 1/20 0.46
▸ PRKCI P41743 1/20 0.46
▸ HDAC6 Q9UBN7 1/20 0.45
▸ MAPT P10636 1/20 0.44
▸ RAD52 P43351 1/20 0.44
▸ QPCT Q16769 1/20 0.44
▸ QPCTL Q9NXS2 1/20 0.44

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
Benzimidazole SCHEMBL4371075 1.00 KDM4E (0.51) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL158526 0.94 SMN1; SMN2 (0.54) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL9028632 0.92 SMN1; SMN2 (0.49) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL10531809 0.92 KDM4E (0.49) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL16516335 0.90 SMN1; SMN2 (0.57) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL8901469 0.90 SMN1; SMN2 (0.57) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL2334176 0.90 PRKCI (0.50) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL11810774 0.89 KDM4E (0.46) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Terephthalamide SCHEMBL29216571 0.89 PARP1 (0.54) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1
Benzimidazole SCHEMBL4306997 0.89 CTNNB1 (0.47) KDM4EPARP1SMN1; SMN2RAB9AALDH1A1

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 31 patents — showing the first 20. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
CN-104876878-B - 2 alkyl substituted urea benzimidazoles compound of 5- aryl phenols and its application 中国科学院广州生物医药与健康研究院 2018-04-27 — — CN claimed
CN-104876878-A 5-aryl phenol-2 alkyl substituted urea benzimidazole compound and applications thereof GUANGZHOU INST BIOMED & HEALTH 2015-09-02 — — CN claimed
CN-114195972-B PDMS material containing benzimidazolyl dynamic covalent bond, preparation method and application thereof 四川大学 2023-06-27 — — CN disclosed
CN-114195972-A PDMS material containing benzimidazolyl dynamic covalent bond, preparation method and application thereof 四川大学 2022-03-18 — — CN disclosed
US-20210198266-A1 METHODS AND COMPOSITIONS FOR DRUGS TO TREAT OPHTHALMIC DISEASES DUKE UNIVERSITY 2021-07-01 — — US disclosed
EP-3840745-A1 METHODS AND COMPOSITIONS FOR DRUGS TO TREAT OPHTHALMIC DISEASES Duke University (US) 2021-06-30 — — EP disclosed
CN-112654353-A Methods and pharmaceutical compositions for treating ocular diseases 杜克大学 2021-04-13 — — CN disclosed
US-10813930-B2 Substituted imidazopyridazines and benzimidazoles as inhibitors of FGFR3 INCYTE CORPORATION (US) 2020-10-27 — — US disclosed
WO-2020041344-A1 METHODS AND COMPOSITIONS FOR DRUGS TO TREAT OPHTHALMIC DISEASES DUKE UNIVERSITY (US) 2020-02-27 — — WO disclosed
US-20190240220-A1 SUBSTITUTED IMIDAZOPYRIDAZINES AND BENZIMIDAZOLES AS INHIBITORS OF FGFR3 INCYTE CORPORATION 2019-08-08 — — US disclosed
CN-108828110-A The measuring method of benzimidazoles residues residual quantity in one breeder fat 广东出入境检验检疫局检验检疫技术中心 2018-11-16 — — CN disclosed
WO-2013024427-A1 NOVEL UREA DERIVATIVES AS TEC KINASE INHIBITORS AND USES THEREOF GLENMARK PHARMACEUTICALS S.A. (CH) 2013-02-21 — — WO disclosed
US-20120165305-A1 SUBSTITUTED IMIDAZOPYRIDAZINES AND BENZIMIDAZOLES AS INHIBITORS OF FGFR3 INCYTE CORPORATION 2012-06-28 — — US disclosed
WO-2012088266-A2 SUBSTITUTED IMIDAZOPYRIDAZINES AND BENZIMIDAZOLES AS INHIBITORS OF FGFR3 INCYTE CORPORATION (US) 2012-06-28 — — WO disclosed
EP-2368905-A2 Process for the control of production of fine chemicals Metanomics GmbH (DE) 2011-09-28 — — EP disclosed
EP-2096177-A2 Process for the production of lutein Metanomics GmbH (DE) 2009-09-02 — — EP disclosed
EP-1974049-A2 PROCESS FOR THE CONTROL OF PRODUCTION OF FINE CHEMICALS Metanomics GmbH (DE) 2008-10-01 — — EP disclosed
EP-1953235-A2 New genes related to a process for the production of fine chemicals Metanomics GmbH (DE) 2008-08-06 — — EP disclosed
EP-1765857-A2 PROCESS FOR THE PRODUCTION OF FINE CHEMICALS Metanomics GmbH (DE) 2007-03-28 — — EP disclosed
US-6380232-B1 FOR THERAPY OF CANCER OR A VIRAL INFECTION IN WARM BLOODED ANIMALS, MAY BE USED IN COMBINATION WITH POTENTIATOR OR OTHER DRUG THE PROCTER & GAMBLE COMPANY 2002-04-30 — — US disclosed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (4 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20190240220-A1 SUBSTITUTED IMIDAZOPYRIDAZINES AND BENZIMIDAZOLES AS INHIBITORS OF FGFR3 FGFR3, FGFR4, FGFR2 KDM4E 668/4885PARP1 2115/4885SMN1; SMN2 2466/4885
US-20210198266-A1 METHODS AND COMPOSITIONS FOR DRUGS TO TREAT OPHTHALMIC DISEASES CAMKK2, CILK1, CAMK2D KDM4E 3323/4885PARP1 2668/4885SMN1; SMN2 1984/4885
US-20120165305-A1 SUBSTITUTED IMIDAZOPYRIDAZINES AND BENZIMIDAZOLES AS INHIBITORS OF FGFR3 FGFR3, FGFR4, FGFR2 KDM4E 668/4885PARP1 2115/4885SMN1; SMN2 2466/4885
US-10813930-B2 Substituted imidazopyridazines and benzimidazoles as inhibitors of FGFR3 FGFR3, FGFR4, FGFR2 KDM4E 668/4885PARP1 2115/4885SMN1; SMN2 2466/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.

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