Known targets — ChEMBL curated mechanism
ABCC9ABL1ACEACHEACVR1ADORA1ADORA2AADORA2BADORA3ADRA1AADRA1BADRA1DADRA2AADRA2BADRA2CADRB1ADRB2ADRB3AGTR1ALOX5ATP4AATP4BBCRBTKCACNA1ACACNA1BCACNA1CCACNA1DCACNA1ECACNA1FCACNA1GCACNA1HCACNA1ICACNA1SCACNA2D1CACNA2D2CACNA2D3CACNA2D4CACNB1CACNB2CACNB3CACNB4CACNG1CACNG2CACNG3CACNG4CACNG5CACNG6CACNG7CACNG8CALCRLCFBCHRM1CHRM2CHRM3CHRM4CHRM5CHRNA1CHRNB1CHRNDCHRNECHRNGCRBNCUL4ACXCR1CXCR2DDB1DDCDHFRDPP4DRD2DRD3DRD4EGFRERBB2ERBB4ESR1ESR2FDPSFKBP1AFLT1FLT3FLT4GARTGHSRGRIA1GRIA2GRIA3GRIA4GRIK1GRIK2GRIK3GRIK4GRIK5GRIN2AGSK3AGSK3BHDAC1HDAC10HDAC11HDAC2HDAC3HDAC4HDAC5HDAC6HDAC7HDAC8HDAC9HRH1HTR1AHTR1BHTR1DHTR1EHTR1FHTR2AHTR2BHTR2CHTR3AHTR3BHTR3CHTR3DHTR3EHTR4HTR5AHTR6HTR7IDH1IDH2IMPA1ITGA2BITGB3JAK1JAK2JAK3KCNJ11KCNK3KCNK9KDRKITMEN1METMMP1MMP13MMP7MMP8NANOD2NS5bODC1OPG057OPRD1OPRK1OPRM1PPARP1PARP2PDE3APDE3BPDE4APDE4BPDE4CPDE4DPDGFRBPIK3CAPIK3CBPIK3CDPIK3CGPIK3R1PIK3R2PIK3R3PIK3R5PKLRPPARDPPATPTGS1PTGS2RBX1ROCK1ROCK2RRM1RRM2RRM2BSCN10ASCN11ASCN1ASCN2ASCN3ASCN4ASCN5ASCN7ASCN8ASCN9ASCNN1ASCNN1BSCNN1GSIGMAR1SLC10A2SLC5A2SLC6A2SLC6A3SLC6A4SLC9A3SYKTACR1THRATHRBTOP1TUBA1ATUBA1BTUBA1CTUBA3CTUBA3ETUBA4ATUBBTUBB1TUBB2ATUBB2BTUBB3TUBB4ATUBB4BTUBB6TUBB8TYK2TYMSVDRampCblablaT-3blaT-4blaT-5blaT-6blaUOE-1dacAdacBdacCfolAfolPftsIgyrAgyrBileSmecAmrcAmrcBmrdAparCparEpbp2pbp4pbpApbpFrplArplBrplCrplDrplErplFrplIrplJrplKrplLrplMrplNrplOrplPrplQrplRrplSrplTrplUrplVrplWrplXrplYrpmArpmBrpmCrpmDrpmErpmE2rpmFrpmGrpmG1rpmG2rpmG3rpmHrpmIrpmJrpsArpsBrpsCrpsDrpsErpsFrpsGrpsHrpsIrpsJrpsKrpsLrpsMrpsNrpsOrpsPrpsQrpsRrpsSrpsTrpsUthyAykgMykgO
The experimentally established mechanism targets of Malonic Acid. The predicted profile below is derived independently by chemical similarity — agreement is a validation signal, a miss is honest.
Predicted protein targets (top 14)
| gene | UniProt | supporting neighbours | confidence | |
|---|---|---|---|---|
| ▸ | HDAC3 known ✓ | O15379 | 2/20 | 0.37 |
| ▸ | HDAC1 known ✓ | Q13547 | 2/20 | 0.37 |
| ▸ | HDAC2 known ✓ | Q92769 | 2/20 | 0.37 |
| ▸ | HDAC8 known ✓ | Q9BY41 | 2/20 | 0.37 |
| ▸ | CA4 | P22748 | 4/20 | 0.83 |
| ▸ | CASP1 | P29466 | 1/20 | 0.41 |
| ▸ | FFAR3 | O14843 | 2/20 | 0.37 |
| ▸ | LMNA | P02545 | 2/20 | 0.35 |
| ▸ | CA1 | P00915 | 3/20 | 0.33 |
| ▸ | CA2 | P00918 | 2/20 | 0.33 |
| ▸ | BBOX1 | O75936 | 1/20 | 0.33 |
| ▸ | CA12 | O43570 | 1/20 | 0.33 |
| ▸ | CA9 | Q16790 | 1/20 | 0.33 |
| ▸ | FAHD1 | Q6P587 | 1/20 | 0.33 |
Click a target to see other patent compounds predicted against it — the reverse direction, in place.
Similar compounds — the chemically nearest patent molecules
Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.
| Compound | similarity | top predicted | shared targets | |
|---|---|---|---|---|
| Malonic Acid SCHEMBL15270467 | 1.00 | — | — | |
| Malonic Acid SCHEMBL121874 | 0.96 | — | — | |
| Malonic Acid SCHEMBL10594878 | 0.92 | CA4 (0.92) | CA4CASP1FFAR3HDAC3HDAC1 | |
| Malonic Acid SCHEMBL22466326 | 0.92 | — | — | |
| Malonic Acid SCHEMBL957647 | 0.92 | CA4 (0.83) | CA4CASP1FFAR3HDAC3HDAC1 | |
| Malonic Acid SCHEMBL4365583 | 0.92 | CA4 (0.83) | CA4CASP1FFAR3HDAC3HDAC1 | |
| Malonic Acid SCHEMBL954992 | 0.92 | CA4 (0.83) | CA4CASP1FFAR3HDAC3HDAC1 | |
| Malonic Acid SCHEMBL4620517 | 0.92 | — | — | |
| Malonic Acid SCHEMBL955599 | 0.92 | CA4 (0.83) | CA4CASP1FFAR3HDAC3HDAC1 | |
| Malonic Acid SCHEMBL29171484 | 0.92 | — | — |
Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.
Patent provenance — the patents this molecule appears in, and who filed them
Claimed or disclosed in 8 patents. claimed = in the patent's claims; disclosed = body only.
| Patent | Title | Assignee | Published | Priority | Filing | Country | Status |
|---|---|---|---|---|---|---|---|
| US-11597951-B2 | Method for preparation of diester derivatives of malonic acid | LYGOS, INC. (US) | 2023-03-07 | — | — | US | disclosed |
| US-20230023780-A1 | PROCESS FOR PURIFICATION OF MALONIC ACID FROM FERMENTATION BROTH | LYGOS, INC. | 2023-01-26 | — | — | US | disclosed |
| US-11326191-B2 | Process for purification of malonic acid from fermentation broth | LYGOS, INC. (US) | 2022-05-10 | — | — | US | disclosed |
| US-20200399666-A1 | METHOD FOR PREPARATION OF DIESTER DERIVATIVES OF MALONIC ACID | LYGOS, INC. | 2020-12-24 | — | — | US | disclosed |
| US-20190284585-A1 | PROCESS FOR PURIFICATION OF MALONIC ACID FROM FERMENTATION BROTH | LYGOS, INC. (US) | 2019-09-19 | — | — | US | disclosed |
| WO-2019160862-A1 | METHOD FOR PREPARATION OF DIESTER DERIVATIVES OF MALONIC ACID | LYGOS, INC. (US) | 2019-08-22 | — | — | WO | disclosed |
| WO-2019040737-A1 | RECOVERY OF MALONIC ACID AND ITS ESTERS | LYGOS, INC. (US) | 2019-02-28 | — | — | WO | disclosed |
| WO-2018089971-A1 | PROCESS FOR PURIFICATION OF MALONIC ACID FROM FERMENTATION BROTH | LYGOS, INC. (US) | 2018-05-17 | — | — | WO | disclosed |