Spermidine

Spermidine

SCHEMBL573651

Cl.NCCCCNCCCN

nearest known ligand 1.00 ✓ in ChEMBL — recovers established targets

Full drug profile on Sugi Atlas →

Known targets — ChEMBL curated mechanism

ABL1ACEACHEACVR1ADRA1AADRA1BADRA1DADRA2AADRA2BADRA2CADRB1ADRB2ADRB3AGTR1ALKAVPR1AAVPR2BCHEBCRCA2CACNA1ACACNA1BCACNA1CCACNA1DCACNA1ECACNA1FCACNA1GCACNA1HCACNA1ICACNA1SCACNA2D1CACNA2D2CACNA2D3CACNA2D4CACNB1CACNB2CACNB3CACNB4CACNG1CACNG2CACNG3CACNG4CACNG5CACNG6CACNG7CACNG8CALCRLCASRCCR5CDK4CDK6CFBCHRM1CHRM2CHRM3CHRM4CHRM5CHRNA1CHRNA3CHRNA7CHRNB1CHRNB4CHRNDCHRNECHRNGCOXFA4COXFA4L2CRBNCSF1RCUL4ACYP19A1DDB1DPP4DRD1DRD2DRD3DRD4EDNRAEGFREML4ERBB2ERBB4ESR1ESR2FGFR1FGFR3FLT1FLT3FLT4GAAGABRA1GABRA2GABRA3GABRA4GABRA5GABRA6GABRB1GABRB2GABRB3GABRDGABREGABRG1GABRG2GABRG3GABRPGABRQGHSRGLAGNRHRGPD2GRIN1GRIN2AGRIN2BGRIN2CGRIN2DGRIN3AGRIN3BGSTP1HCN4HCRTR1HCRTR2HDAC1HDAC10HDAC11HDAC2HDAC3HDAC4HDAC5HDAC6HDAC7HDAC8HDAC9HRH1HRH2HRH3HSD11B1HSP90AA1HSP90AB1HTR1AHTR1BHTR1DHTR1EHTR1FHTR2AHTR2BHTR2CHTR3AHTR3BHTR3CHTR3DHTR3EHTR4HTR5AHTR6HTR7IMPDH1IMPDH2ITGA2BITGB3ITKJAK1JAK2KCNA1KCNA10KCNA2KCNA3KCNA4KCNA5KCNA6KCNA7KCNB1KCNB2KCNC1KCNC2KCNC3KCNC4KCND1KCND2KCND3KCNF1KCNG1KCNG2KCNG3KCNG4KCNH1KCNH2KCNH3KCNH4KCNH5KCNH6KCNH7KCNH8KCNJ2KCNJ3KCNJ5KCNK3KCNK9KCNQ1KCNQ2KCNQ3KCNQ4KCNQ5KCNS1KCNS2KCNS3KCNV1KCNV2KDRKITKLKB1LCKMMAOAMAOBMAPK14METMMP1MMP13MMP7MMP8MT-ND1MT-ND2MT-ND3MT-ND4MT-ND4LMT-ND5MT-ND6NDUFA1NDUFA10NDUFA11NDUFA12NDUFA13NDUFA2NDUFA3NDUFA5NDUFA6NDUFA7NDUFA8NDUFA9NDUFAB1NDUFAF1NDUFAF2NDUFAF3NDUFAF4NDUFB1NDUFB10NDUFB11NDUFB2NDUFB3NDUFB4NDUFB5NDUFB6NDUFB7NDUFB8NDUFB9NDUFC1NDUFC2NDUFS1NDUFS2NDUFS3NDUFS4NDUFS5NDUFS6NDUFS7NDUFS8NDUFV1NDUFV2NDUFV3NR3C1NS5ANTRK1NTRK2NTRK3ODC1OPRD1OPRK1OPRM1P2RY12PAHPARP1PDE3APDE3BPDE4APDE4BPDE4CPDE4DPDE5APDE7APDE7BPDE8APDE8BPDGFRAPDGFRBPIK3CAPIK3CDPNPPOLA1POLA2POLD1POLD2POLD3POLD4POLEPOLE2POLE3PPARGPRIM1PRIM2PRKCAPRKCBPRKCDPRKCEPRKCGPRKCHPRKCIPRKCQPRKCZPRKD1PRKD3PTGS1PTGS2RBX1RENRETROCK1ROCK2RPE65RRM1RRM2RRM2BS1PR1S1PR2S1PR3S1PR4S1PR5SCN10ASCN11ASCN1ASCN2ASCN3ASCN4ASCN5ASCN7ASCN8ASCN9ASCNN1ASCNN1BSCNN1GSIGMAR1SLC18A2SLC6A1SLC6A2SLC6A3SLC6A4SLC9A3SRCTACR1TOP1TOP2ATOP2BTTRTYMPdacAdacBdacCembAfolAftsIgyrAgyrBmrcAmrcBmrdAparCparEpolrplArplBrplCrplDrplErplFrplIrplJrplKrplLrplMrplNrplOrplPrplQrplRrplSrplTrplUrplVrplWrplXrplYrpmArpmBrpmCrpmDrpmErpmE2rpmFrpmGrpmG1rpmG2rpmG3rpmHrpmIrpmJrpsArpsBrpsCrpsDrpsErpsFrpsGrpsHrpsIrpsJrpsKrpsLrpsMrpsNrpsOrpsPrpsQrpsRrpsSrpsTrpsUykgMykgO

The experimentally established mechanism targets of Spermidine. The predicted profile below is derived independently by chemical similarity — agreement is a validation signal, a miss is honest.

Predicted protein targets (top 20)

geneUniProtsupporting neighboursconfidence
▸ CA2 known ✓ P00918 4/20 0.93
▸ ESR1 known ✓ P03372 1/20 0.60
▸ LMNA P02545 3/20 1.00
▸ SMN1; SMN2 Q16637 1/20 1.00
▸ CA12 O43570 5/20 0.93
▸ CA6 P23280 5/20 0.93
▸ CA7 P43166 5/20 0.93
▸ CA9 Q16790 5/20 0.93
▸ CA14 Q9ULX7 5/20 0.93
▸ CA5B Q9Y2D0 5/20 0.93
▸ CA4 P22748 4/20 0.93
▸ CA5A P35218 4/20 0.93
▸ ALOX15 P16050 3/20 0.93
▸ CA3 P07451 3/20 0.93
▸ F13A1 P00488 2/20 0.93
▸ CYP1A2 P05177 2/20 0.93
▸ THPO P40225 2/20 0.93
▸ CA1 P00915 2/20 0.93
▸ UBE2N P61088 1/20 0.93
▸ CYP2C9 P11712 1/20 0.93

Click a target to see other patent compounds predicted against it — the reverse direction, in place.

Similar compounds — the chemically nearest patent molecules

Nearest neighbours by Morgan-fingerprint cosine across the patent-compound collection, with each neighbour's top predicted target and the predicted targets it shares with this molecule.

Compoundsimilaritytop predictedshared targets
Spermidine SCHEMBL3623585 1.00 LMNA (1.00) LMNASMN1; SMN2CA12CA6CA7
Spermidine SCHEMBL7928492 1.00 LMNA (1.00) LMNASMN1; SMN2CA12CA6CA7
Spermidine SCHEMBL573341 1.00 LMNA (1.00) LMNASMN1; SMN2CA12CA6CA7
Spermidine SCHEMBL343877 1.00 LMNA (1.00) LMNASMN1; SMN2CA12CA6CA7
Spermidine SCHEMBL29150448 0.97 LMNA (0.94) LMNASMN1; SMN2CA12CA6CA7
Hydrochloric Acid SCHEMBL9392489 0.97 LMNA (0.94) LMNASMN1; SMN2CA12CA6CA7
Hydrochloric Acid SCHEMBL31268131 0.97 LMNA (0.94) LMNASMN1; SMN2CA12CA6CA7
Spermidine SCHEMBL2514294 0.97 LMNA (0.94) LMNASMN1; SMN2CA12CA6CA7
Hydrochloric Acid SCHEMBL8186500 0.97 LMNA (0.94) LMNASMN1; SMN2CA12CA6CA7
Hydrochloric Acid SCHEMBL30866180 0.97 LMNA (0.93) LMNASMN1; SMN2CA12CA6CA7

Similarity is cosine over the 2,048-bit Morgan fingerprint (≈ Tanimoto). Identical fingerprints score 1.00.

Patent provenance — the patents this molecule appears in, and who filed them

Claimed or disclosed in 505 patents — showing the first 20. claimed = in the patent's claims; disclosed = body only.

PatentTitleAssigneePublishedPriorityFilingCountryStatus
CN-119219502-A Preparation method of spermidine 达高工业技术研究院(广州)有限公司 2024-12-31 — — CN claimed
CN-115876904-B Method for detecting purity of spermidine hydrochloride and related substances thereof 尚科生物医药(上海)有限公司 2024-12-20 — — CN claimed
CN-116693402-A Spermidine hydrochloride crystal compound and preparation method thereof 无锡富泽药业有限公司 2023-09-05 — — CN claimed
US-20230219881-A1 Synthesis of Spermidine, Spermine, and Free Bases Thereof Compound Solutions Inc. (US) 2023-07-13 — — US claimed
CN-116203057-A Method for determining content of spermidine in spermidine hydrochloride by hydrogen nuclear magnetic quantitative analysis technology 尚科生物医药(上海)有限公司 2023-06-02 — — CN claimed
CN-116064936-A Primer probe, detection card and method for simultaneously detecting new coronavirus and influenza virus 广州万孚生物技术股份有限公司 2023-05-05 — — CN claimed
CN-115876904-A Method for detecting purity of spermidine hydrochloride and related substances thereof 尚科生物医药(上海)有限公司 2023-03-31 — — CN claimed
CN-111302953-B Method for synthesizing spermidine hydrochloride 南京康立瑞生物科技有限公司 2022-08-19 — — CN claimed
CN-114588137-A Application of triclosan in preparation of medicine for killing parasitic nematodes 中国农业科学院兰州兽医研究所 2022-06-07 — — CN claimed
CN-112851447-A Liquid fertilizer rich in nano silicon and spermidine, preparation method and application thereof in crop stress resistance 广东海洋大学 2021-05-28 — — CN claimed
CN-102424825-A Method for extracting total RNA from leaves and flower buds of filbert UNIV BEIJING FORESTRY 2012-04-25 — — CN claimed
CN-102121003-A Method for extracting total rna YANG JUN 2011-07-13 — — CN claimed
CN-1829496-B Use of spermine and/or spermidine against skin ageing in edible, pharmaceutical or cosmetic compositions GIULIANI SPA 2011-02-09 — — CN claimed
US-7803559-B1 Protein aggregation regulators THE REGENTS OF THE UNIVERSITY OF CA (US) 2010-09-28 — — US claimed
EP-1926466-A2 STABLE EMULSION SYSTEMS WITH HIGH SALT TOLERANCE COMBE INCORPORATED (US) 2008-06-04 — — EP claimed
US-20070276134-A1 COMPOSITIONS AND METHODS FOR COMPLEXES OF NUCLEIC ACIDS AND ORGANIC CATIONS NASTECH PHARMACEUTICAL COMPANY INC. (US) 2007-11-29 — — US claimed
US-20070213257-A1 COMPOSITIONS AND METHODS FOR COMPLEXES OF NUCLEIC ACIDS AND PEPTIDES NASTECH PHARMACEUTICAL COMPANY INC. 2007-09-13 — — US claimed
WO-2007040598-A2 STABLE EMULSION SYSTEMS WITH HIGH SALT TOLERANCE COMBE INCORPORATED (US) 2007-04-12 — — WO claimed
US-20070065390-A1 Stable emulsion systems with high salt tolerance RECKITT BENCKISER LLC 2007-03-22 — — US claimed
CN-1829496-A Use of spermine and/or spermidine against skin ageing in edible, pharmaceutical or cosmetic compositions GIULIANI SPA (IT) 2006-09-06 — — CN claimed

Patent text — is the patent's own abstract consistent with the prediction?

For each of this compound's patents that has machine-readable text (3 of them — usually the abstract, not the full specification), we ask MedCPT which protein the text reads most about, and where the chemistry-predicted target lands among 4885 human targets. A high rank means the patent's own wording is consistent with the prediction — a weak, independent signal, not proof of activity.

PatentTitleText reads most aboutPredicted target · text-rank
US-20070276134-A1 COMPOSITIONS AND METHODS FOR COMPLEXES OF NUCLEIC ACIDS AND ORGANIC CATIONS NSUN2, NSUN3, POLRMT CA2 652/4885ESR1 2910/4885LMNA 750/4885
US-20070213257-A1 COMPOSITIONS AND METHODS FOR COMPLEXES OF NUCLEIC ACIDS AND PEPTIDES NSUN2, NOP2, POLRMT CA2 947/4885ESR1 3593/4885LMNA 299/4885
US-20230219881-A1 Synthesis of Spermidine, Spermine, and Free Bases Thereof SRM, SMS, SMOX CA2 2235/4885ESR1 4515/4885LMNA 2682/4885

“Text reads most about” is the patent abstract's nearest protein in MedCPT space (background-debiased). Only ~1.4% of patents have machine-readable text, so most compounds won't have this panel.

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